C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB11 family interacting protein 5 (class I)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000060837 Rab11fip5-201 ENSMUSG00000051343 10090 - 6:85334963-85374634 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000060837
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000060837 12.929±0.67 15.289±1.66 15.858±3.77 5.841±3.07 11.156±4.91 5.611±0.68 11.182±0.25 18.965±2.27 0.366±0.18 6.462±1.75 7.757±0.58 16.689±5.50 12.566±11.93 30.505±11.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087O CIL_00087O_0002 VISTA 6:84864955-85466474
CIL_0008RW CIL_0008RW_0002 VISTA 6:84918005-85518946
CIL_0002DT CIL_0002DT_0003 CGP 6:85213051-85374634
CIL_0003EE CIL_0003EE_0002 CGP 6:85334963-85428877

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005739 IDA mitochondrion
GO:0005741 ISS mitochondrial outer membrane
GO:0005769 IDA early endosome
GO:0005794 IDA Golgi apparatus
GO:0005815 IEA microtubule organizing center
GO:0015031 IEA protein transport
GO:0030141 IDA secretory granule
GO:0035773 IMP insulin secretion involved in cellular response to glucose stimulus
GO:0043015 ISS gamma-tubulin binding
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0045055 IMP regulated secretory pathway
GO:0055037 IDA recycling endosome
GO:0071468 IEA cellular response to acidic pH
GO:2000008 IEA regulation of protein localization to cell surface

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000258098 RAB11FIP5-001 protein_coding Homo_sapiens 0 1962
ENST00000475951 RAB11FIP5-007 processed_transcript Homo_sapiens 0 431
ENST00000479196 RAB11FIP5-005 processed_transcript Homo_sapiens 0 211
ENST00000482554 RAB11FIP5-003 processed_transcript Homo_sapiens 0 424
ENST00000486777 RAB11FIP5-004 processed_transcript Homo_sapiens 0 425
ENST00000493523 RAB11FIP5-002 processed_transcript Homo_sapiens 0 1443

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