C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cholinergic receptor, nicotinic, beta polypeptide 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000060943 Chrnb3-201 ENSMUSG00000031492 10090 + 8:27368711-27399729 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonHeartKidneyOvaryTestisENSMUST00000060943
Transcript ID Adipose Brain Colon Heart Kidney Ovary Testis
ENSMUST00000060943 0.017±0.01 0.196±0.15 0.006±0.00 0.006±0.00 0.002±0.00 0.006±0.00 0.165±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009C5 CIL_0009C5_0002 VISTA 8:26806327-27408431
CIL_0007QT CIL_0007QT_0002 VISTA 8:26806345-27408424
CIL_0002IT CIL_0002IT_0002 CGP 8:27368711-27413944

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004889 IEA acetylcholine-activated cation-selective channel activity
GO:0005892 IEA acetylcholine-gated channel complex
GO:0008144 IEA drug binding
GO:0030054 IEA cell junction
GO:0042166 IEA acetylcholine binding
GO:0043005 IEA neuron projection
GO:0045211 IEA postsynaptic membrane
GO:0051291 IEA protein heterooligomerization
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000289957 CHRNB3-001 protein_coding Homo_sapiens 0 1151
ENST00000534391 CHRNB3-002 protein_coding Homo_sapiens 0 222

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