C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002IT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000147432-ENSG00000147434 CGP 9606 8:42697376-42796392
GeneTranscriptPositionBiotype
ENSG00000147432 (CHRNB3)
cholinergic receptor, nicotinic, beta 3 (neuronal) 		ENST00000289957 (CHRNB3-001) 42697419-42737407 protein_coding
ENST00000531610 (CHRNB3-003) 42697376-42708758 processed_transcript
ENST00000534391 (CHRNB3-002) 42697376-42710435 protein_coding
ENSG00000147434 (CHRNA6)
cholinergic receptor, nicotinic, alpha 6 (neuronal) 		ENST00000276410 (CHRNA6-001) 42752620-42768786 protein_coding
ENST00000529467 (CHRNA6-002) 42764973-42768648 retained_intron
ENST00000530869 (CHRNA6-003) 42756940-42768632 processed_transcript
ENST00000533810 (CHRNA6-005) 42756629-42796392 protein_coding
ENST00000534622 (CHRNA6-004) 42752927-42768610 protein_coding
ENSG00000255101 (RP11-412B14.1)
 ENST00000527318 (RP11-412B14.1-001) 42705583-42721946 antisense
ENSG00000255361 (RP11-412B14.2)
 ENST00000530523 (RP11-412B14.2-001) 42725547-42726228 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0002IT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031492-ENSMUSG00000031491 CGP 10090 8:27368711-27413944
GeneTranscriptPositionBiotype
ENSMUSG00000031491 (Chrna6)
cholinergic receptor, nicotinic, alpha polypeptide 6 		ENSMUST00000033882 (Chrna6-201) 27403214-27413944 protein_coding
ENSMUSG00000031492 (Chrnb3)
cholinergic receptor, nicotinic, beta polypeptide 3 		ENSMUST00000060943 (Chrnb3-201) 27368711-27399729 protein_coding
ENSMUST00000079463 (Chrnb3-202) 27368711-27399729 protein_coding

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002IT_0001ENSG00000147432ENST00000289957ENST00000531610ENST00000534391ENSG00000147434ENST00000276410ENST00000529467ENST00000530869ENST00000533810ENST00000534622ENSG00000255101ENST00000527318ENSG00000255361ENST00000530523CIL_0002IT_0002ENSMUSG00000031491ENSMUST00000033882ENSMUSG00000031492ENSMUST00000060943ENSMUST00000079463
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002IT_0001ENSG00000147432ENST00000289957ENST00000531610ENSG00000147434ENST00000276410ENST00000529467ENST00000530869ENST00000533810ENST00000534622ENSG00000255101ENST00000527318ENSG00000255361ENST00000530523CIL_0002IT_0002ENSMUSG00000031491ENSMUST00000033882ENSMUSG00000031492ENSMUST00000060943ENSMUST00000079463
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000147432 ENST00000289957 N/A N/A N/A N/A N/A N/A N/A 0.491±0.00 N/A 0.029±0.00 N/A 0.011±0.00 N/A N/A
ENST00000531610 0.087±0.00 0.119±0.00 N/A N/A N/A N/A N/A 0.117±0.00 N/A N/A N/A N/A N/A N/A
ENST00000534391 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000147434 ENST00000276410 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.057±0.04 0.013±0.00 N/A
ENST00000529467 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.117±0.00 N/A 0.068±0.00
ENST00000530869 N/A N/A N/A N/A 0.053±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.062±0.00
ENST00000533810 N/A N/A N/A 0.102±0.00 N/A N/A N/A N/A N/A 0.024±0.00 N/A N/A N/A N/A
ENST00000534622 N/A 0.007±0.00 N/A 0.146±0.05 0.023±0.00 N/A N/A N/A N/A N/A 0.023±0.00 0.021±0.00 0.022±0.00 0.035±0.00
ENSG00000255101 ENST00000527318 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.044±0.00 0.450±0.24
ENSG00000255361 ENST00000530523 N/A N/A N/A N/A N/A 0.060±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031491 ENSMUST00000033882 N/A N/A N/A 0.325±0.21 N/A 0.062±0.02 N/A N/A 0.058±0.01 N/A N/A N/A N/A 0.029±0.01
ENSMUSG00000031492 ENSMUST00000060943 0.017±0.01 N/A N/A 0.196±0.15 N/A 0.006±0.00 0.006±0.00 0.002±0.00 N/A N/A N/A 0.006±0.00 N/A 0.165±0.06
ENSMUST00000079463 0.007±0.00 N/A 0.007±0.00 N/A N/A 0.018±0.01 0.006±0.00 0.007±0.00 0.037±0.00 N/A N/A N/A 0.006±0.00 0.092±0.06

Loading