C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002IT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000147432-ENSG00000147434 CGP 9606 8:42697376-42796392
GeneTranscriptPositionBiotype
ENSG00000147432 (CHRNB3)
cholinergic receptor, nicotinic, beta 3 (neuronal) 		ENST00000289957 (CHRNB3-001) 42697419-42737407 protein_coding
ENST00000531610 (CHRNB3-003) 42697376-42708758 processed_transcript
ENST00000534391 (CHRNB3-002) 42697376-42710435 protein_coding
ENSG00000147434 (CHRNA6)
cholinergic receptor, nicotinic, alpha 6 (neuronal) 		ENST00000276410 (CHRNA6-001) 42752620-42768786 protein_coding
ENST00000529467 (CHRNA6-002) 42764973-42768648 retained_intron
ENST00000530869 (CHRNA6-003) 42756940-42768632 processed_transcript
ENST00000533810 (CHRNA6-005) 42756629-42796392 protein_coding
ENST00000534622 (CHRNA6-004) 42752927-42768610 protein_coding
ENSG00000255101 (RP11-412B14.1)
 ENST00000527318 (RP11-412B14.1-001) 42705583-42721946 antisense
ENSG00000255361 (RP11-412B14.2)
 ENST00000530523 (RP11-412B14.2-001) 42725547-42726228 processed_pseudogene
CIL_0002IT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031492-ENSMUSG00000031491 CGP 10090 8:27368711-27413944
GeneTranscriptPositionBiotype
ENSMUSG00000031491 (Chrna6)
cholinergic receptor, nicotinic, alpha polypeptide 6 		ENSMUST00000033882 (Chrna6-201) 27403214-27413944 protein_coding
ENSMUSG00000031492 (Chrnb3)
cholinergic receptor, nicotinic, beta polypeptide 3 		ENSMUST00000060943 (Chrnb3-201) 27368711-27399729 protein_coding
ENSMUST00000079463 (Chrnb3-202) 27368711-27399729 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002IT_0001ENSG00000147432ENST00000289957ENST00000531610ENST00000534391ENSG00000147434ENST00000276410ENST00000529467ENST00000530869ENST00000533810ENST00000534622ENSG00000255101ENST00000527318ENSG00000255361ENST00000530523CIL_0002IT_0002ENSMUSG00000031491ENSMUST00000033882ENSMUSG00000031492ENSMUST00000060943ENSMUST00000079463
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002IT_0001ENSG00000147432ENST00000289957ENST00000531610ENSG00000147434ENST00000276410ENST00000529467ENST00000530869ENST00000533810ENST00000534622ENSG00000255101ENST00000527318ENSG00000255361ENST00000530523CIL_0002IT_0002ENSMUSG00000031491ENSMUST00000033882ENSMUSG00000031492ENSMUST00000060943ENSMUST00000079463
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000147432 ENST00000289957 N/A N/A N/A N/A N/A N/A N/A 0.491±0.00 N/A 0.029±0.00 N/A 0.011±0.00 N/A N/A
ENST00000531610 0.087±0.00 0.119±0.00 N/A N/A N/A N/A N/A 0.117±0.00 N/A N/A N/A N/A N/A N/A
ENST00000534391 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000147434 ENST00000276410 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.057±0.04 0.013±0.00 N/A
ENST00000529467 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.117±0.00 N/A 0.068±0.00
ENST00000530869 N/A N/A N/A N/A 0.053±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.062±0.00
ENST00000533810 N/A N/A N/A 0.102±0.00 N/A N/A N/A N/A N/A 0.024±0.00 N/A N/A N/A N/A
ENST00000534622 N/A 0.007±0.00 N/A 0.146±0.05 0.023±0.00 N/A N/A N/A N/A N/A 0.023±0.00 0.021±0.00 0.022±0.00 0.035±0.00
ENSG00000255101 ENST00000527318 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.044±0.00 0.450±0.24
ENSG00000255361 ENST00000530523 N/A N/A N/A N/A N/A 0.060±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031491 ENSMUST00000033882 N/A N/A N/A 0.325±0.21 N/A 0.062±0.02 N/A N/A 0.058±0.01 N/A N/A N/A N/A 0.029±0.01
ENSMUSG00000031492 ENSMUST00000060943 0.017±0.01 N/A N/A 0.196±0.15 N/A 0.006±0.00 0.006±0.00 0.002±0.00 N/A N/A N/A 0.006±0.00 N/A 0.165±0.06
ENSMUST00000079463 0.007±0.00 N/A 0.007±0.00 N/A N/A 0.018±0.01 0.006±0.00 0.007±0.00 0.037±0.00 N/A N/A N/A 0.006±0.00 0.092±0.06

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