C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: reticulon 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000060992 Rtn4-009 ENSMUSG00000020458 10090 + 11:29718563-29742916 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverMuscleOvaryENSMUST00000060992
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Muscle Ovary
ENSMUST00000060992 46.212±13.35 23.013±0.00 172.163±0.00 58.304±23.87 6.732±1.15 20.994±6.14 33.280±8.08 403.880±39.98 48.121±20.39

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IMP angiogenesis
GO:0005515 IPI protein binding
GO:0005635 ISS nuclear envelope
GO:0005783 IDA endoplasmic reticulum
GO:0007399 IDA nervous system development
GO:0007413 IMP axonal fasciculation
GO:0021801 IMP cerebral cortex radial glia guided migration
GO:0030176 ISS integral component of endoplasmic reticulum membrane
GO:0030517 ISS negative regulation of axon extension
GO:0042995 IDA cell projection
GO:0043025 IDA neuronal cell body
GO:0051960 IMP regulation of nervous system development
GO:0060317 IMP cardiac epithelial to mesenchymal transition
GO:2000172 IMP regulation of branching morphogenesis of a nerve

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000317610 RTN4-002 protein_coding Homo_sapiens 0 1218
ENST00000337526 RTN4-001 protein_coding Homo_sapiens 0 1216
ENST00000357376 RTN4-014 protein_coding Homo_sapiens 0 1216
ENST00000357732 RTN4-007 protein_coding Homo_sapiens 0 1216
ENST00000394609 RTN4-008 protein_coding Homo_sapiens 0 1487
ENST00000394611 RTN4-013 protein_coding Homo_sapiens 0 1216
ENST00000402434 RTN4-201 protein_coding Homo_sapiens 0 909
ENST00000404909 RTN4-006 protein_coding Homo_sapiens 0 1216
ENST00000405240 RTN4-003 protein_coding Homo_sapiens 0 1216
ENST00000438462 RTN4-012 protein_coding Homo_sapiens 0 754
ENST00000485749 RTN4-011 processed_transcript Homo_sapiens 0 296
ENST00000486085 RTN4-009 processed_transcript Homo_sapiens 0 399
ENST00000491592 RTN4-010 processed_transcript Homo_sapiens 0 233

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