C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: reticulon 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394609 RTN4-008 ENSG00000115310 9606 - 2:54972187-55010449 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000394609
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000394609 14.387±0.00 113.421±40.58 8.950±0.00 16.891±0.00 1.884±0.00 54.345±35.44 15.492±0.85 10.028±0.00 41.112±27.75 15.615±9.17 35.865±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005622 IMP intracellular
GO:0005635 IDA nuclear envelope
GO:0005783 IDA endoplasmic reticulum
GO:0005886 TAS plasma membrane
GO:0006915 NAS apoptotic process
GO:0007413 ISS axonal fasciculation
GO:0021801 ISS cerebral cortex radial glia guided migration
GO:0030176 IDA integral component of endoplasmic reticulum membrane
GO:0030308 IMP negative regulation of cell growth
GO:0030334 IDA regulation of cell migration
GO:0030517 IDA negative regulation of axon extension
GO:0042981 NAS regulation of apoptotic process
GO:0044822 IDA poly(A) RNA binding
GO:0048011 TAS neurotrophin TRK receptor signaling pathway
GO:0050770 TAS regulation of axonogenesis
GO:0050771 TAS negative regulation of axonogenesis
GO:0070062 IDA extracellular vesicular exosome
GO:0071786 IMP endoplasmic reticulum tubular network organization
GO:2000172 ISS regulation of branching morphogenesis of a nerve

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000060992 Rtn4-009 protein_coding Mus_musculus 0 1487
ENSMUST00000078830 Rtn4-007 protein_coding Mus_musculus 0 1218
ENSMUST00000102841 Rtn4-008 protein_coding Mus_musculus 0 1216
ENSMUST00000102842 Rtn4-006 protein_coding Mus_musculus 0 1216
ENSMUST00000102843 Rtn4-005 protein_coding Mus_musculus 0 1216
ENSMUST00000170731 Rtn4-201 protein_coding Mus_musculus 0 856
ENSMUST00000141719 Rtn4-003 processed_transcript Mus_musculus 0 409
ENSMUST00000156217 Rtn4-004 processed_transcript Mus_musculus 0 399
ENSMUST00000126162 Rtn4-001 processed_transcript Mus_musculus 0 292
ENSMUST00000125735 Rtn4-002 processed_transcript Mus_musculus 0 292

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