C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin beta 21
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000061405 Pcdhb21-201 ENSMUSG00000044022 10090 + 18:37513652-37518313 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000061405
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000061405 0.577±0.36 0.936±0.50 0.175±0.00 0.489±0.25 0.268±0.11 0.199±0.06 0.146±0.06 0.035±0.03 0.830±0.29 0.045±0.01 0.992±0.53 0.025±0.01 0.083±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000P CGP 18:37504264-37518313
CIL_00062S CIL_00062S_000I CGP 18:37513652-37521419

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000341948 PCDHB13-001 protein_coding Homo_sapiens 0 832
ENST00000524813 PCDHB18-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 1624
ENST00000526308 PCDHB18-002 processed_transcript Homo_sapiens 0 1657
ENST00000618012 PCDHGB9P-001 unprocessed_pseudogene Homo_sapiens 0.000000000002 79

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