C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin gamma subfamily B, 9 pseudogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000618012 PCDHGB9P-001 ENSG00000276545 9606 + 5:141439853-141442449 unprocessed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000618012
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000618012 0.040±0.00 0.026±0.00 0.052±0.02 0.092±0.00 0.025±0.00 0.182±0.00 0.077±0.02 0.284±0.27 0.205±0.00 0.023±0.00 0.061±0.02 0.020±0.00 0.058±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000630 CIL_000630_000Q CGP 5:141330571-141512981
CIL_000630 CIL_000630_000P CGP 5:141338760-141512979
CIL_000630 CIL_000630_0012 CGP 5:141343829-141512979
CIL_000630 CIL_000630_0011 CGP 5:141350102-141512979
CIL_000630 CIL_000630_0015 CGP 5:141355025-141512979
CIL_000630 CIL_000630_000Y CGP 5:141360042-141512979
CIL_000630 CIL_000630_000S CGP 5:141364232-141512979
CIL_000630 CIL_000630_0014 CGP 5:141370264-141512979
CIL_000630 CIL_000630_000U CGP 5:141373914-141512979
CIL_000630 CIL_000630_000T CGP 5:141382739-141512979
CIL_000630 CIL_000630_000Z CGP 5:141387698-141512979
CIL_000630 CIL_000630_000V CGP 5:141390157-141512979
CIL_000630 CIL_000630_0016 CGP 5:141397987-141512979
CIL_000630 CIL_000630_0013 CGP 5:141402932-141512979
CIL_000630 CIL_000630_000R CGP 5:141408021-141512979
CIL_000630 CIL_000630_000W CGP 5:141412987-141512979
CIL_000630 CIL_000630_0010 CGP 5:141417645-141512979
CIL_000630 CIL_000630_000X CGP 5:141421047-141512979

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000053073 Pcdhb11-201 protein_coding Mus_musculus 0.000000000000001 90
ENSMUST00000055949 Pcdhb18-201 protein_coding Mus_musculus 0.00000000000001 86
ENSMUST00000097609 Pcdhb22-201 protein_coding Mus_musculus 0.000000000002 79
ENSMUST00000061405 Pcdhb21-201 protein_coding Mus_musculus 0.000000000002 79
ENSMUST00000056712 Pcdhb4-201 protein_coding Mus_musculus 0.000000000002 79

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