C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: three prime repair exonuclease 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000061973 Trex1-001 ENSMUSG00000049734 10090 - 9:109057933-109059734 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartKidneyLiverMuscleOvaryENSMUST00000061973
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Kidney Liver Muscle Ovary
ENSMUST00000061973 8.409±0.39 13.455±0.68 6.174±1.58 8.187±2.50 9.101±0.00 5.218±0.24 5.221±1.03 3.076±0.00 3.551±0.28 13.709±2.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002UL CIL_0002UL_0002 CGP 9:109057933-109074124

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000738 IEA DNA catabolic process, exonucleolytic
GO:0003690 IDA double-stranded DNA binding
GO:0003697 IDA single-stranded DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0005783 IEA endoplasmic reticulum
GO:0006259 IDA DNA metabolic process
GO:0008296 IDA 3'-5'-exodeoxyribonuclease activity
GO:0008408 ISS 3'-5' exonuclease activity
GO:0008853 IEA exodeoxyribonuclease III activity
GO:0016020 IEA membrane
GO:0032405 ISA MutLalpha complex binding
GO:0032407 ISA MutSalpha complex binding
GO:0032558 IDA adenyl deoxyribonucleotide binding
GO:0035458 IDA cellular response to interferon-beta
GO:0042803 IPI protein homodimerization activity
GO:0046872 IEA metal ion binding
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

No Homologs available.

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