C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002UL_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000164053-ENSG00000213689 CGP 9606 3:48446710-48467645
GeneTranscriptPositionBiotype
ENSG00000164053 (ATRIP)
ATR interacting protein 		ENST00000320211 (ATRIP-001) 48446733-48465655 protein_coding
ENST00000346691 (ATRIP-002) 48446733-48465655 protein_coding
ENST00000357105 (ATRIP-201) 48446710-48465655 protein_coding
ENST00000412052 (ATRIP-005) 48447093-48465716 protein_coding
ENST00000421175 (ATRIP-007) 48446710-48459397 protein_coding
ENST00000424906 (ATRIP-003) 48446737-48465655 nonsense_mediated_decay
ENST00000436480 (ATRIP-202) 48446846-48467644 protein_coding
ENST00000454733 (ATRIP-008) 48446710-48460162 nonsense_mediated_decay
ENST00000491468 (ATRIP-009) 48454358-48459684 retained_intron
ENSG00000213689 (TREX1)
three prime repair exonuclease 1 		ENST00000296443 (TREX1-002) 48465046-48467645 protein_coding
ENST00000395677 (TREX1-001) 48465046-48467645 retained_intron
ENST00000433541 (TREX1-003) 48465811-48467645 protein_coding
ENST00000444177 (TREX1-004) 48465946-48467643 protein_coding
ENST00000456089 (TREX1-005) 48466262-48467645 protein_coding
ENST00000492235 (TREX1-006) 48466270-48467433 processed_transcript

Homo sapiens Ensembl (GRCh38)

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CIL_0002UL_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025646-ENSMUSG00000025646 CGP 10090 9:109057933-109074124
GeneTranscriptPositionBiotype
ENSMUSG00000025646 (Atrip)
ATR interacting protein 		ENSMUST00000045011 (Atrip-001) 109059696-109074124 protein_coding
ENSMUST00000159614 (Atrip-005) 109060661-109065393 protein_coding
ENSMUST00000160217 (Atrip-003) 109057933-109074071 nonsense_mediated_decay
ENSMUST00000160928 (Atrip-002) 109057936-109074097 nonsense_mediated_decay
ENSMUST00000161163 (Atrip-007) 109059810-109061862 retained_intron
ENSMUST00000161270 (Atrip-006) 109067465-109069519 retained_intron
ENSMUST00000161521 (Atrip-004) 109059785-109074052 protein_coding
ENSMUSG00000049734 (Trex1)
three prime repair exonuclease 1 		ENSMUST00000061973 (Trex1-001) 109057933-109059734 protein_coding
ENSMUST00000112053 (Trex1-002) 109057938-109059251 protein_coding
ENSMUST00000128062 (Trex1-003) 109058470-109060338 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002UL_0001ENSG00000164053ENST00000320211ENST00000346691ENST00000357105ENST00000412052ENST00000421175ENST00000424906ENST00000436480ENST00000454733ENST00000491468ENSG00000213689ENST00000296443ENST00000395677ENST00000433541ENST00000444177ENST00000456089ENST00000492235CIL_0002UL_0002ENSMUSG00000025646ENSMUST00000045011ENSMUST00000159614ENSMUST00000160217ENSMUST00000160928ENSMUST00000161163ENSMUST00000161270ENSMUST00000161521ENSMUSG00000049734ENSMUST00000061973ENSMUST00000112053ENSMUST00000128062
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002UL_0001ENSG00000164053ENST00000320211ENST00000346691ENST00000357105ENST00000412052ENST00000421175ENST00000424906ENST00000436480ENSG00000213689ENST00000296443ENST00000395677ENST00000433541ENST00000444177ENST00000456089ENST00000492235CIL_0002UL_0002ENSMUSG00000025646ENSMUST00000045011ENSMUST00000160217ENSMUST00000160928ENSMUST00000161163ENSMUST00000161521ENSMUSG00000049734ENSMUST00000061973ENSMUST00000112053ENSMUST00000128062
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000164053 ENST00000320211 0.701±0.00 2.355±0.00 N/A 0.167±0.00 1.580±0.75 0.202±0.00 1.107±0.00 2.260±0.00 N/A N/A 1.159±0.00 2.933±1.60 2.738±0.03 10.757±4.46
ENST00000346691 N/A N/A N/A 0.973±0.00 N/A N/A 0.161±0.00 N/A 0.848±0.00 0.596±0.50 1.540±0.00 0.989±0.79 N/A 2.360±0.00
ENST00000357105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.943±0.00
ENST00000412052 N/A N/A N/A 0.145±0.00 N/A N/A N/A N/A 0.249±0.00 0.116±0.00 N/A N/A N/A N/A
ENST00000421175 N/A N/A N/A 0.526±0.00 0.569±0.00 0.597±0.00 N/A N/A N/A 0.214±0.00 N/A 0.739±0.00 N/A N/A
ENST00000424906 N/A N/A N/A N/A N/A 0.360±0.00 N/A N/A N/A N/A N/A N/A N/A 2.041±0.00
ENST00000436480 N/A N/A N/A N/A 0.786±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454733 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491468 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213689 ENST00000296443 N/A N/A 0.392±0.00 0.398±0.00 0.850±0.00 N/A 0.395±0.00 0.969±0.00 N/A N/A 0.163±0.00 0.565±0.00 N/A N/A
ENST00000395677 N/A N/A N/A 0.597±0.00 N/A N/A N/A 1.708±0.00 N/A N/A 0.207±0.00 N/A N/A N/A
ENST00000433541 N/A N/A N/A 0.716±0.00 N/A N/A N/A 2.907±0.00 1.257±0.00 5.592±0.00 3.069±0.00 N/A N/A N/A
ENST00000444177 2.651±0.00 N/A N/A 3.585±0.00 4.207±0.00 N/A N/A N/A N/A 6.930±0.00 3.129±0.00 3.637±0.00 5.910±1.37 N/A
ENST00000456089 N/A 14.771±0.00 N/A 5.785±0.00 N/A 2.365±1.10 2.496±0.00 1.123±0.00 1.834±0.74 11.034±0.00 6.473±0.00 8.922±0.00 8.878±0.75 N/A
ENST00000492235 7.238±0.00 18.642±0.00 N/A 7.144±0.00 6.004±3.59 2.704±1.17 0.601±0.00 N/A 1.154±0.00 5.377±3.59 2.908±0.00 4.453±1.68 10.995±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025646 ENSMUST00000045011 3.773±0.70 9.867±0.00 2.200±0.01 3.410±1.13 N/A 4.337±1.06 N/A 2.936±0.58 2.344±0.40 N/A 1.458±0.00 4.470±2.41 1.716±0.71 2.267±1.00
ENSMUST00000159614 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160217 2.353±0.01 N/A 0.993±0.05 2.747±0.80 N/A 1.826±0.00 N/A N/A 0.944±0.10 N/A 0.901±0.38 3.429±0.94 0.781±0.43 0.396±0.20
ENSMUST00000160928 3.507±0.66 9.958±0.81 2.052±0.07 2.304±0.07 7.156±0.99 3.971±1.02 2.149±0.91 2.748±0.71 1.753±0.38 5.281±0.59 1.025±0.25 5.179±2.65 0.919±0.06 0.446±0.24
ENSMUST00000161163 N/A N/A N/A N/A N/A 12.114±0.00 N/A N/A N/A N/A N/A 24.742±5.43 N/A N/A
ENSMUST00000161270 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161521 N/A N/A N/A 2.871±0.00 N/A N/A N/A N/A N/A N/A N/A 3.090±0.00 2.882±1.09 0.685±0.00
ENSMUSG00000049734 ENSMUST00000061973 8.409±0.39 13.455±0.68 6.174±1.58 8.187±2.50 N/A 9.101±0.00 5.218±0.24 5.221±1.03 3.076±0.00 N/A 3.551±0.28 13.709±2.25 N/A N/A
ENSMUST00000112053 20.745±3.24 37.699±5.29 10.714±1.36 7.747±0.59 57.350±18.03 23.001±2.66 9.812±2.96 12.027±1.72 12.151±2.71 30.281±2.54 5.685±1.36 32.668±9.06 5.444±2.47 2.715±0.33
ENSMUST00000128062 N/A N/A N/A 6.066±0.00 N/A N/A N/A N/A N/A N/A N/A 6.775±0.00 N/A N/A

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