C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: shroom family member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000062317 Shroom2-001 ENSMUSG00000045180 10090 - X:152609992-152769465 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000062317
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000062317 0.677±0.60 0.426±0.15 0.291±0.05 0.763±0.00 0.432±0.23 0.880±0.07 0.261±0.06 1.072±0.21 0.717±0.56 1.045±0.26 0.082±0.01 1.980±0.86 1.934±0.94 0.248±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002TC CIL_0002TC_0002 CGP X:152563334-152769465

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002089 ISS lens morphogenesis in camera-type eye
GO:0003779 IDA actin binding
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005856 IDA cytoskeleton
GO:0005874 IEA microtubule
GO:0005886 IDA plasma membrane
GO:0005911 IDA cell-cell junction
GO:0005913 IDA cell-cell adherens junction
GO:0005923 IDA tight junction
GO:0005938 IDA cell cortex
GO:0007420 ISS brain development
GO:0008013 IDA beta-catenin binding
GO:0008057 ISS eye pigment granule organization
GO:0016324 IDA apical plasma membrane
GO:0016477 IMP cell migration
GO:0019904 IPI protein domain specific binding
GO:0030835 IDA negative regulation of actin filament depolymerization
GO:0030864 IDA cortical actin cytoskeleton
GO:0031941 IDA filamentous actin
GO:0032401 ISS establishment of melanosome localization
GO:0032438 IMP melanosome organization
GO:0043010 ISS camera-type eye development
GO:0043025 IDA neuronal cell body
GO:0043296 IDA apical junction complex
GO:0043482 ISS cellular pigment accumulation
GO:0043583 ISS ear development
GO:0045176 ISS apical protein localization
GO:0045217 IDA cell-cell junction maintenance
GO:0048593 ISS camera-type eye morphogenesis
GO:0051015 IDA actin filament binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000380913 SHROOM2-001 protein_coding Homo_sapiens 0 1123
ENST00000418909 SHROOM2-201 protein_coding Homo_sapiens 0 1110
ENST00000452575 SHROOM2-002 protein_coding Homo_sapiens 0 867

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