C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: EMI domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000062821 Emid1-001 ENSMUSG00000034164 10090 - 11:5106265-5152257 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000062821
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000062821 3.131±3.20 2.467±0.36 19.208±4.78 2.704±0.43 2.369±0.78 5.630±1.37 0.495±0.27 2.683±1.16 0.681±0.39 6.202±0.90 1.646±0.66 2.060±1.26 3.319±1.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004MN CIL_0004MN_0002 CGP 11:5098926-5152257

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005578 IDA proteinaceous extracellular matrix
GO:0005581 IEA collagen trimer
GO:0005783 IDA endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000101004 col17a1a-201 protein_coding Danio_rerio 0.000003 58
ENSDART00000142957 col17a1a-001 protein_coding Danio_rerio 0.000003 58
ENST00000334018 EMID1-003 protein_coding Homo_sapiens 0 1325
ENST00000404755 EMID1-001 protein_coding Homo_sapiens 0 891
ENST00000404820 EMID1-002 protein_coding Homo_sapiens 0 1092
ENST00000429226 EMID1-006 protein_coding Homo_sapiens 0 592
ENST00000430127 EMID1-005 protein_coding Homo_sapiens 0 372
ENST00000435427 EMID1-008 nonsense_mediated_decay Homo_sapiens 1e-29 134
ENST00000484039 EMID1-007 processed_transcript Homo_sapiens 0 486
ENST00000487477 EMID1-011 retained_intron Homo_sapiens 0 436
ENST00000488820 EMID1-010 retained_intron Homo_sapiens 0 492

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