C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000064545 Limd2-003 ENSMUSG00000040699 10090 - 11:106158431-106159927 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000064545
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000064545 26.345±2.66 62.274±31.43 15.582±5.08 93.631±28.70 6.933±2.46 1.517±0.00 12.936±3.19 17.266±4.40 68.860±16.49 2.237±0.00 27.659±15.63 18.910±5.40 42.127±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B9 CIL_0009B9_0002 VISTA 11:105834084-106435839
CIL_0003AI CIL_0003AI_0003 CGP 11:106084613-106160860

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000259006 LIMD2-001 protein_coding Homo_sapiens 0 496
ENST00000578061 LIMD2-011 protein_coding Homo_sapiens 0 496
ENST00000578067 LIMD2-004 retained_intron Homo_sapiens 0 387
ENST00000578297 LIMD2-012 retained_intron Homo_sapiens 0 387
ENST00000578402 LIMD2-002 protein_coding Homo_sapiens 0 496
ENST00000578993 LIMD2-010 protein_coding Homo_sapiens 0 224
ENST00000579329 LIMD2-005 retained_intron Homo_sapiens 0 202
ENST00000579814 LIMD2-008 retained_intron Homo_sapiens 0 387
ENST00000580222 LIMD2-009 nonsense_mediated_decay Homo_sapiens 0 422
ENST00000582055 LIMD2-006 protein_coding Homo_sapiens 0 422
ENST00000583211 LIMD2-003 protein_coding Homo_sapiens 0 422
ENST00000584645 LIMD2-007 protein_coding Homo_sapiens 0 399

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