C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LIM domain containing 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000040699 Limd2 10090 - 11:106156256-106160860 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000045923 Limd2-001 106156256-106160142 protein_coding
  ENSMUST00000064545 Limd2-003 106158431-106159927 protein_coding
  ENSMUST00000106875 Limd2-002 106158651-106160860 protein_coding
  ENSMUST00000138094 Limd2-004 106158314-106159409 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000045923ENSMUST00000064545ENSMUST00000106875ENSMUST00000138094
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000045923 9.380±0.00 19.210±7.38 7.279±3.99 42.664±23.12 7.786±1.00 2.408±0.63 9.872±1.37 9.618±5.70 12.749±0.00 0.540±0.34 15.546±8.91 11.340±11.82 36.086±16.79
ENSMUST00000064545 26.345±2.66 62.274±31.43 15.582±5.08 93.631±28.70 6.933±2.46 1.517±0.00 12.936±3.19 17.266±4.40 68.860±16.49 2.237±0.00 27.659±15.63 18.910±5.40 42.127±0.00
ENSMUST00000106875 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 98.710±8.22
ENSMUST00000138094 N/A N/A 9.881±6.58 30.977±0.00 N/A N/A N/A N/A N/A 3.607±0.00 9.919±0.49 40.345±27.23 21.537±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B9 CIL_0009B9_0002 VISTA 11:105834084-106435839
CIL_0003AI CIL_0003AI_0003 CGP 11:106084613-106160860

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078092 limd2 LIM domain containing 2 protein_coding Danio_rerio
ENSG00000136490 LIMD2 LIM domain containing 2 protein_coding Homo_sapiens

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