C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAS related protein 1b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000064667 Rap1b-201 ENSMUSG00000052681 10090 - 10:117814471-117845935 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000064667
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000064667 36.682±5.19 57.071±15.49 28.640±6.07 24.017±7.11 44.691±4.80 47.314±8.09 19.715±2.58 28.750±8.84 26.442±12.21 55.499±21.19 6.848±1.09 63.521±40.69 52.722±15.51 9.922±2.53

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 ISS GTPase activity
GO:0005515 IPI protein binding
GO:0005525 ISS GTP binding
GO:0005737 IEA cytoplasm
GO:0005811 IEA lipid particle
GO:0005829 IEA cytosol
GO:0005886 IEA plasma membrane
GO:0005911 ISS cell-cell junction
GO:0006184 IEA GTP catabolic process
GO:0007264 IDA small GTPase mediated signal transduction
GO:0008283 IPI cell proliferation
GO:0019003 ISS GDP binding
GO:0032403 ISO protein complex binding
GO:0032486 ISS Rap protein signal transduction
GO:0045955 IGI negative regulation of calcium ion-dependent exocytosis
GO:0061028 ISS establishment of endothelial barrier
GO:0070062 IEA extracellular vesicular exosome
GO:0070374 IGI positive regulation of ERK1 and ERK2 cascade
GO:0071320 ISS cellular response to cAMP
GO:1901888 ISS regulation of cell junction assembly
GO:2000114 ISS regulation of establishment of cell polarity
GO:2000301 IGI negative regulation of synaptic vesicle exocytosis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000042250 rap1b-201 protein_coding Danio_rerio 0 475
ENSDART00000132081 rap1b-001 protein_coding Danio_rerio 0 464
ENSDART00000131580 rap1aa-001 protein_coding Danio_rerio 0 401
ENSDART00000050671 rap1aa-002 protein_coding Danio_rerio 0 401
ENST00000250559 RAP1B-001 protein_coding Homo_sapiens 0 3013
ENST00000341355 RAP1B-018 protein_coding Homo_sapiens 0 832
ENST00000378985 RAP1B-008 protein_coding Homo_sapiens 0 555
ENST00000393436 RAP1B-002 protein_coding Homo_sapiens 0 2868
ENST00000412709 RAP1BP1-001 processed_pseudogene Homo_sapiens 0 662
ENST00000425247 RAP1B-013 protein_coding Homo_sapiens 0 630
ENST00000450214 RAP1B-007 protein_coding Homo_sapiens 0 1927
ENST00000453560 RAP1B-023 protein_coding Homo_sapiens 0 564
ENST00000460800 RAP1B-003 processed_transcript Homo_sapiens 0 254
ENST00000463493 RAP1B-005 processed_transcript Homo_sapiens 0 948
ENST00000485252 RAP1B-027 protein_coding Homo_sapiens 0 220
ENST00000506621 RP11-466P24.2-001 processed_pseudogene Homo_sapiens 0 754
ENST00000529355 CTR9-004 retained_intron Homo_sapiens 0 695
ENST00000534899 RAP1B-024 protein_coding Homo_sapiens 0 348
ENST00000535492 RAP1B-026 protein_coding Homo_sapiens 0 411
ENST00000537460 RAP1B-006 protein_coding Homo_sapiens 0 1009
ENST00000538283 RAP1B-015 protein_coding Homo_sapiens 0 398
ENST00000538877 RAP1B-029 protein_coding Homo_sapiens 0 237
ENST00000538980 RAP1B-020 protein_coding Homo_sapiens 0 654
ENST00000539091 RAP1B-010 protein_coding Homo_sapiens 0 1155
ENST00000540209 RAP1B-009 protein_coding Homo_sapiens 0 1498
ENST00000540781 RAP1B-025 protein_coding Homo_sapiens 0 588
ENST00000541167 RAP1B-014 protein_coding Homo_sapiens 0 372
ENST00000541216 RAP1B-004 protein_coding Homo_sapiens 0 658
ENST00000542018 RAP1B-022 protein_coding Homo_sapiens 0 383
ENST00000542145 RAP1B-011 protein_coding Homo_sapiens 0 1168
ENST00000543393 RAP1B-021 protein_coding Homo_sapiens 0 1116
ENST00000543697 RAP1B-030 protein_coding Homo_sapiens 0 497
ENST00000544639 RAP1B-032 retained_intron Homo_sapiens 0 512
ENST00000545270 RAP1B-019 protein_coding Homo_sapiens 0 484
ENST00000545720 RAP1B-031 protein_coding Homo_sapiens 0 337
ENST00000554348 RP11-804M7.2-001 processed_pseudogene Homo_sapiens 8.40779e-45 182

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