C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: autophagy related 4D, cysteine peptidase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000065005 Atg4d-201 ENSMUSG00000002820 10090 + 9:21265299-21274368 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000065005
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000065005 7.122±2.32 9.560±2.30 5.116±1.96 6.771±4.47 7.979±3.79 29.175±7.27 6.436±1.34 17.671±2.34 15.834±7.26 7.976±4.07 8.428±2.69 9.245±3.25 17.321±2.81 8.376±2.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002SU CIL_0002SU_0002 CGP 9:21242912-21274368
CIL_000496 CIL_000496_0002 CGP 9:21265299-21287969

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004197 ISS cysteine-type endopeptidase activity
GO:0005737 ISS cytoplasm
GO:0005739 IEA mitochondrion
GO:0006508 IEA proteolysis
GO:0006914 ISS autophagy
GO:0006915 IEA apoptotic process
GO:0015031 IEA protein transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000309469 ATG4D-001 protein_coding Homo_sapiens 0 1474
ENST00000585752 ATG4D-012 nonsense_mediated_decay Homo_sapiens 0 283
ENST00000586417 ATG4D-002 nonsense_mediated_decay Homo_sapiens 0 1323
ENST00000586477 ATG4D-007 protein_coding Homo_sapiens 2e-37 159
ENST00000588667 ATG4D-005 nonsense_mediated_decay Homo_sapiens 0 859
ENST00000588857 ATG4D-003 nonsense_mediated_decay Homo_sapiens 0 782
ENST00000588972 ATG4D-010 protein_coding Homo_sapiens 0 566
ENST00000589753 ATG4D-006 nonsense_mediated_decay Homo_sapiens 0 630
ENST00000590096 ATG4D-004 retained_intron Homo_sapiens 2e-30 137

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