C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: autophagy related 4D, cysteine peptidase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000588857 ATG4D-003 ENSG00000130734 9606 + 19:10543917-10553067 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastHeartKidneyLiverMusclePlacentaENST00000588857
Transcript ID Breast Heart Kidney Liver Muscle Placenta
ENST00000588857 6.378±0.00 9.692±0.00 11.512±0.00 2.980±0.00 12.890±0.00 6.271±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002SU CIL_0002SU_0001 CGP 19:10512742-10553418
CIL_000496 CIL_000496_0001 CGP 19:10543895-10566037

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0006508 IEA proteolysis
GO:0006914 IEA autophagy
GO:0008234 IEA cysteine-type peptidase activity
GO:0015031 IEA protein transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000065005 Atg4d-201 protein_coding Mus_musculus 0 782

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