C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: laminin, beta 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000065014 Lamb2-201 ENSMUSG00000052911 10090 + 9:108479862-108490530 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000065014
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000065014 49.953±4.88 46.454±4.81 41.173±1.59 8.554±0.24 43.901±5.01 19.388±1.30 62.560±13.65 16.873±1.45 2.584±1.54 63.031±3.48 17.818±1.51 59.834±18.57 41.652±22.72 6.126±1.27

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000904 IGI cell morphogenesis involved in differentiation
GO:0005178 IPI integrin binding
GO:0005576 TAS extracellular region
GO:0005604 IDA basement membrane
GO:0005605 IDA basal lamina
GO:0005608 IDA laminin-3 complex
GO:0007155 IEA cell adhesion
GO:0007411 IGI axon guidance
GO:0007528 IMP neuromuscular junction development
GO:0007601 IGI visual perception
GO:0014002 IGI astrocyte development
GO:0014044 IDA Schwann cell development
GO:0031012 IEA extracellular matrix
GO:0031175 IDA neuron projection development
GO:0043256 IDA laminin complex
GO:0045202 IDA synapse
GO:0048677 IMP axon extension involved in regeneration
GO:0050808 IMP synapse organization
GO:0060041 IGI retina development in camera-type eye
GO:0070062 IEA extracellular vesicular exosome
GO:0072249 IMP metanephric glomerular visceral epithelial cell development
GO:0072274 IMP metanephric glomerular basement membrane development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000012166 lamb2-201 protein_coding Danio_rerio 0 364
ENSDART00000147326 lamb2-001 protein_coding Danio_rerio 0 364
ENST00000305544 LAMB2-003 protein_coding Homo_sapiens 0 5734
ENST00000418109 LAMB2-001 protein_coding Homo_sapiens 0 5734
ENST00000462930 LAMB2-012 retained_intron Homo_sapiens 0 702
ENST00000464891 LAMB2-013 processed_transcript Homo_sapiens 0 534
ENST00000467506 LAMB2-004 retained_intron Homo_sapiens 0 368
ENST00000469665 LAMB2-009 retained_intron Homo_sapiens 0 442
ENST00000477225 LAMB2-010 retained_intron Homo_sapiens 0 370
ENST00000480640 LAMB2-011 retained_intron Homo_sapiens 0 586
ENST00000483057 LAMB2-014 retained_intron Homo_sapiens 0 573
ENST00000484713 LAMB2-007 retained_intron Homo_sapiens 0 326
ENST00000486298 LAMB2-015 processed_transcript Homo_sapiens 0 222
ENST00000488638 LAMB2-017 retained_intron Homo_sapiens 0 303
ENST00000494831 LAMB2-018 protein_coding Homo_sapiens 0 577
ENST00000498377 LAMB2-008 retained_intron Homo_sapiens 0 728
ENST00000538659 LAMB2-020 retained_intron Homo_sapiens 0 279
ENST00000542580 LAMB2-019 retained_intron Homo_sapiens 0 710

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