C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: suppressor of cytokine signaling 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000065562 Socs4-001 ENSMUSG00000048379 10090 + 14:47276931-47296098 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000065562
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000065562 3.285±0.88 5.954±0.54 3.691±0.06 2.738±1.27 3.587±0.70 3.629±0.28 1.836±0.18 2.939±0.46 4.012±1.68 4.949±0.51 0.972±0.16 4.073±1.40 3.030±0.67 1.515±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000603 CIL_000603_0003 CGP 14:47240944-47296098
CIL_0000IA CIL_0000IA_0002 CGP 14:47276931-47323204

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0007175 ISS negative regulation of epidermal growth factor-activated receptor activity
GO:0016567 IEA protein ubiquitination
GO:0032436 ISS positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0035556 IEA intracellular signal transduction
GO:0040008 IEA regulation of growth

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000339298 SOCS4-003 protein_coding Homo_sapiens 0 1491
ENST00000395472 SOCS4-001 protein_coding Homo_sapiens 0 1539
ENST00000555846 SOCS4-002 protein_coding Homo_sapiens 0 1491

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