C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000603_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000015998-ENSDARG00000078509 CGP 7955 17:14991018-15042270
GeneTranscriptPositionBiotype
ENSDARG00000015998 (wdhd1)
WD repeat and HMG-box DNA binding protein 1 		ENSDART00000002176 (wdhd1-201) 14991265-15030624 protein_coding
ENSDART00000110507 (wdhd1-202) 14991018-15027618 protein_coding
ENSDART00000133710 (wdhd1-001) 14991182-15030636 protein_coding
ENSDART00000138764 (wdhd1-004) 14991264-15030624 nonsense_mediated_decay
ENSDART00000151885 (wdhd1-002) 15025136-15029679 protein_coding
ENSDARG00000078509 (socs4)
suppressor of cytokine signaling 4 		ENSDART00000124426 (socs4-001) 15037966-15042270 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_000603_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000198554-ENSG00000180008 CGP 9606 14:54938950-55049488
GeneTranscriptPositionBiotype
ENSG00000180008 (SOCS4)
suppressor of cytokine signaling 4 		ENST00000339298 (SOCS4-003) 55027627-55049486 protein_coding
ENST00000395472 (SOCS4-001) 55027230-55049488 protein_coding
ENST00000553735 (SOCS4-004) 55027281-55031994 processed_transcript
ENST00000555846 (SOCS4-002) 55027248-55046708 protein_coding
ENSG00000198554 (WDHD1)
WD repeat and HMG-box DNA binding protein 1 		ENST00000360586 (WDHD1-001) 54938950-55027077 protein_coding
ENST00000420358 (WDHD1-002) 54941159-55027105 protein_coding
ENST00000455555 (WDHD1-003) 55008316-55027051 protein_coding
ENST00000475379 (WDHD1-004) 54941271-54944607 retained_intron
ENST00000567693 (WDHD1-005) 54941176-54991382 nonsense_mediated_decay
ENSG00000233924 (AL160471.6)
 ENST00000415189 (AL160471.6-001) 55004813-55005687 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_000603_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000037572-ENSMUSG00000048379 CGP 10090 14:47240944-47296098
GeneTranscriptPositionBiotype
ENSMUSG00000037572 (Wdhd1)
WD repeat and HMG-box DNA binding protein 1 		ENSMUST00000111790 (Wdhd1-002) 47257679-47276832 protein_coding
ENSMUST00000111791 (Wdhd1-001) 47240944-47276832 protein_coding
ENSMUST00000111792 (Wdhd1-004) 47240944-47276790 protein_coding
ENSMUST00000139124 (Wdhd1-003) 47272469-47276807 retained_intron
ENSMUST00000187531 (Wdhd1-201) 47240945-47276857 protein_coding
ENSMUSG00000048379 (Socs4)
suppressor of cytokine signaling 4 		ENSMUST00000065562 (Socs4-001) 47276931-47296098 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000603_0001ENSDARG00000015998ENSDART00000002176ENSDART00000110507ENSDART00000133710ENSDART00000138764ENSDART00000151885ENSDARG00000078509ENSDART00000124426CIL_000603_0002ENSG00000180008ENST00000339298ENST00000395472ENST00000553735ENST00000555846ENSG00000198554ENST00000360586ENST00000420358ENST00000455555ENST00000475379ENST00000567693ENSG00000233924ENST00000415189CIL_000603_0003ENSMUSG00000037572ENSMUST00000111790ENSMUST00000111791ENSMUST00000111792ENSMUST00000139124ENSMUST00000187531ENSMUSG00000048379ENSMUST00000065562
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000603_0001ENSDARG00000015998ENSDART00000002176ENSDART00000110507ENSDART00000133710ENSDART00000138764ENSDART00000151885ENSDARG00000078509ENSDART00000124426CIL_000603_0002ENSG00000180008ENST00000339298ENST00000395472ENST00000553735ENST00000555846ENSG00000198554ENST00000360586ENST00000420358ENST00000455555ENST00000475379ENST00000567693ENSG00000233924ENST00000415189CIL_000603_0003ENSMUSG00000037572ENSMUST00000111790ENSMUST00000111791ENSMUST00000111792ENSMUST00000139124ENSMUST00000187531ENSMUSG00000048379ENSMUST00000065562
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000015998 ENSDART00000002176 N/A N/A N/A N/A N/A N/A 0.063±0.00 N/A N/A N/A 0.109±0.00 N/A N/A N/A
ENSDART00000110507 N/A N/A N/A 0.125±0.03 N/A N/A 0.304±0.15 1.676±0.00 N/A N/A 0.064±0.00 N/A N/A N/A
ENSDART00000133710 N/A N/A N/A 0.366±0.00 N/A N/A N/A 4.098±0.00 0.346±0.00 N/A N/A N/A N/A N/A
ENSDART00000138764 N/A N/A N/A N/A N/A N/A 0.067±0.00 N/A N/A N/A 0.090±0.00 N/A N/A N/A
ENSDART00000151885 N/A N/A N/A N/A N/A N/A 0.319±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000078509 ENSDART00000124426 N/A N/A N/A 0.070±0.01 N/A N/A 0.598±0.34 0.170±0.00 0.153±0.00 N/A 0.036±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000180008 ENST00000339298 N/A N/A N/A 0.739±0.00 1.458±0.00 N/A N/A N/A N/A 0.770±0.00 0.222±0.00 N/A N/A N/A
ENST00000395472 1.928±0.00 1.523±0.00 0.569±0.00 2.135±0.30 1.449±0.65 2.050±0.44 1.223±0.82 1.765±1.16 1.542±0.88 1.630±0.04 0.224±0.00 1.867±0.62 0.668±0.38 1.775±0.00
ENST00000553735 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.311±0.00 N/A N/A N/A
ENST00000555846 N/A N/A 1.973±0.00 N/A N/A 1.967±0.00 0.670±0.00 N/A 1.320±0.00 1.080±0.00 0.549±0.00 1.101±0.00 N/A N/A
ENSG00000198554 ENST00000360586 0.303±0.00 0.105±0.00 N/A 0.319±0.00 N/A 0.395±0.00 N/A N/A N/A 0.541±0.00 N/A 1.341±0.87 0.356±0.11 0.543±0.34
ENST00000420358 N/A 0.167±0.00 N/A 0.663±0.00 0.306±0.14 0.634±0.00 0.159±0.03 0.216±0.01 N/A 0.259±0.00 0.162±0.00 1.229±0.79 0.521±0.29 0.865±0.00
ENST00000455555 N/A N/A N/A N/A N/A N/A N/A N/A 0.631±0.00 N/A N/A N/A N/A N/A
ENST00000475379 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.826±0.00 1.470±0.00 4.206±0.00
ENST00000567693 0.470±0.00 0.188±0.00 N/A 0.316±0.00 0.253±0.00 0.608±0.00 N/A 0.131±0.00 0.039±0.00 0.227±0.00 0.175±0.00 2.713±1.88 1.034±0.84 2.148±0.65
ENSG00000233924 ENST00000415189 N/A N/A N/A N/A 0.130±0.00 0.538±0.00 0.032±0.00 N/A N/A N/A 0.015±0.00 0.842±0.00 0.048±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000037572 ENSMUST00000111790 N/A 0.267±0.08 N/A N/A N/A 0.343±0.00 0.065±0.03 N/A 0.054±0.01 N/A 0.039±0.00 N/A N/A N/A
ENSMUST00000111791 N/A N/A N/A N/A N/A 1.212±0.72 N/A 0.172±0.00 0.293±0.00 N/A 0.128±0.00 0.475±0.00 N/A N/A
ENSMUST00000111792 N/A N/A N/A N/A N/A N/A N/A 0.049±0.00 0.156±0.05 N/A 0.149±0.02 N/A 0.191±0.00 N/A
ENSMUST00000139124 0.221±0.00 N/A N/A N/A 0.458±0.00 N/A N/A 0.057±0.00 0.041±0.01 N/A N/A N/A N/A N/A
ENSMUST00000187531 0.558±0.06 0.315±0.12 0.973±0.18 3.298±1.84 0.986±0.23 1.531±0.31 0.143±0.02 0.226±0.05 11.611±8.65 0.448±0.17 0.201±0.03 1.960±0.72 6.369±4.95 2.573±0.22
ENSMUSG00000048379 ENSMUST00000065562 3.285±0.88 5.954±0.54 3.691±0.06 2.738±1.27 3.587±0.70 3.629±0.28 1.836±0.18 2.939±0.46 4.012±1.68 4.949±0.51 0.972±0.16 4.073±1.40 3.030±0.67 1.515±0.14

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