C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000065766 Adamts6-201 ENSMUSG00000046169 10090 + 13:104287873-104494763 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000065766
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000065766 0.722±0.04 1.350±0.39 0.393±0.00 1.083±0.78 0.481±0.13 0.294±0.11 0.844±0.06 0.308±0.22 0.391±0.19 0.072±0.03 3.568±0.78 0.153±0.09 0.193±0.07

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0004222 IEA metalloendopeptidase activity
GO:0005575 ND cellular_component
GO:0005578 IEA proteinaceous extracellular matrix
GO:0006508 IEA proteolysis
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000138748 adamts6-001 protein_coding Danio_rerio 0 1779
ENSDART00000009715 adamts6-201 protein_coding Danio_rerio 0 1770
ENST00000314351 ADAMTS6-006 processed_transcript Homo_sapiens 0 1524
ENST00000381052 ADAMTS6-008 nonsense_mediated_decay Homo_sapiens 0 3899
ENST00000381055 ADAMTS6-007 protein_coding Homo_sapiens 0 6257
ENST00000417396 ADAMTS6-012 processed_transcript Homo_sapiens 0 580
ENST00000464680 ADAMTS6-009 retained_intron Homo_sapiens 0 3795
ENST00000470597 ADAMTS6-003 retained_intron Homo_sapiens 0 2060
ENST00000502886 ADAMTS6-010 retained_intron Homo_sapiens 0 1552
ENST00000504282 ADAMTS6-011 processed_transcript Homo_sapiens 0 250

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