C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tumor necrosis factor alpha induced protein 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000065927 Tnfaip6-001 ENSMUSG00000053475 10090 + 2:52038009-52056686 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000065927
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000065927 3.137±1.78 0.152±0.06 0.942±0.28 2.087±0.95 3.592±0.87 0.374±0.20 0.350±0.07 0.168±0.11 0.120±0.04 0.424±0.10 0.407±0.09 1.638±0.76 0.115±0.13 0.306±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007E1 CIL_0007E1_0002 CGP 2:51948487-52056686
CIL_0003S5 CIL_0003S5_0003 CGP 2:52038009-52122383

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005540 IEA hyaluronic acid binding
GO:0005615 IEA extracellular space
GO:0007155 IEA cell adhesion
GO:0030335 IEA positive regulation of cell migration
GO:0030728 IEA ovulation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000243347 TNFAIP6-001 protein_coding Homo_sapiens 0 957
ENST00000460812 TNFAIP6-002 retained_intron Homo_sapiens 0 414

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