C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tumor necrosis factor, alpha-induced protein 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000243347 TNFAIP6-001 ENSG00000123610 9606 + 2:151357592-151380048 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000243347
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000243347 0.699±0.00 0.266±0.00 0.076±0.00 0.810±0.19 4.946±0.00 0.565±0.27 0.504±0.36 0.044±0.00 0.845±0.60 6.098±4.34 0.132±0.00 0.478±0.24 0.278±0.05 1.827±0.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007E1 CIL_0007E1_0001 CGP 2:151270465-151380048
CIL_0003S5 CIL_0003S5_0002 CGP 2:151357592-151508013

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005540 IEA hyaluronic acid binding
GO:0005615 IEA extracellular space
GO:0006954 TAS inflammatory response
GO:0007155 IEA cell adhesion
GO:0007165 TAS signal transduction
GO:0007267 TAS cell-cell signaling
GO:0030335 IEA positive regulation of cell migration
GO:0030728 IEA ovulation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000065927 Tnfaip6-001 protein_coding Mus_musculus 0 957

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