C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003S5_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000093440-ENSDARG00000062650 CGP 7955 9:23797580-23835517
GeneTranscriptPositionBiotype
ENSDARG00000062650 (rif1)
RAP1 interacting factor homolog (yeast) 		ENSDART00000090816 (rif1-201) 23815372-23835249 protein_coding
ENSDART00000110992 (rif1-202) 23815369-23835249 protein_coding
ENSDART00000143972 (rif1-001) 23814364-23835517 protein_coding
ENSDARG00000093440 (tnfaip6)
tumor necrosis factor, alpha-induced protein 6 		ENSDART00000090875 (tnfaip6-001) 23797580-23813158 protein_coding
CIL_0003S5_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000123610-ENSG00000080345 CGP 9606 2:151357592-151508013
GeneTranscriptPositionBiotype
ENSG00000080345 (RIF1)
replication timing regulatory factor 1 		ENST00000243326 (RIF1-001) 151409941-151482172 protein_coding
ENST00000414861 (RIF1-006) 151409956-151455110 protein_coding
ENST00000428287 (RIF1-004) 151409886-151475388 protein_coding
ENST00000430328 (RIF1-007) 151410090-151475388 protein_coding
ENST00000444746 (RIF1-003) 151409883-151475388 protein_coding
ENST00000453091 (RIF1-002) 151409883-151475622 protein_coding
ENST00000454583 (RIF1-008) 151464700-151508013 nonsense_mediated_decay
ENST00000457745 (RIF1-009) 151486277-151498213 processed_transcript
ENST00000467762 (RIF1-012) 151505948-151507112 processed_transcript
ENST00000484077 (RIF1-010) 151494975-151498215 processed_transcript
ENST00000494333 (RIF1-005) 151409900-151420379 processed_transcript
ENST00000498041 (RIF1-014) 151420225-151423760 processed_transcript
ENSG00000123610 (TNFAIP6)
tumor necrosis factor, alpha-induced protein 6 		ENST00000243347 (TNFAIP6-001) 151357592-151380048 protein_coding
ENST00000460812 (TNFAIP6-002) 151366142-151373744 retained_intron
ENSG00000242113 (RN7SL124P)
RNA, 7SL, cytoplasmic 124, pseudogene 		ENST00000498656 (RN7SL124P-201) 151372003-151372287 misc_RNA
CIL_0003S5_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000053475-ENSMUSG00000036202 CGP 10090 2:52038009-52122383
GeneTranscriptPositionBiotype
ENSMUSG00000036202 (Rif1)
Rap1 interacting factor 1 homolog (yeast) 		ENSMUST00000069794 (Rif1-001) 52072842-52122383 protein_coding
ENSMUST00000112693 (Rif1-201) 52072837-52122381 protein_coding
ENSMUST00000125116 (Rif1-007) 52093195-52098444 processed_transcript
ENSMUST00000125322 (Rif1-004) 52110984-52122056 processed_transcript
ENSMUST00000125376 (Rif1-005) 52111461-52122109 processed_transcript
ENSMUST00000126218 (Rif1-006) 52073072-52076205 processed_transcript
ENSMUST00000145130 (Rif1-002) 52089573-52107725 processed_transcript
ENSMUST00000152178 (Rif1-003) 52112133-52122381 processed_transcript
ENSMUSG00000053475 (Tnfaip6)
tumor necrosis factor alpha induced protein 6 		ENSMUST00000065927 (Tnfaip6-001) 52038009-52056686 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003S5_0001ENSDARG00000062650ENSDART00000090816ENSDART00000110992ENSDART00000143972ENSDARG00000093440ENSDART00000090875CIL_0003S5_0002ENSG00000080345ENST00000243326ENST00000414861ENST00000428287ENST00000430328ENST00000444746ENST00000453091ENST00000454583ENST00000457745ENST00000467762ENST00000484077ENST00000494333ENST00000498041ENSG00000123610ENST00000243347ENST00000460812ENSG00000242113ENST00000498656CIL_0003S5_0003ENSMUSG00000036202ENSMUST00000069794ENSMUST00000112693ENSMUST00000125116ENSMUST00000125322ENSMUST00000125376ENSMUST00000126218ENSMUST00000145130ENSMUST00000152178ENSMUSG00000053475ENSMUST00000065927
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003S5_0001ENSDARG00000062650ENSDART00000090816ENSDART00000110992ENSDART00000143972ENSDARG00000093440ENSDART00000090875CIL_0003S5_0002ENSG00000080345ENST00000243326ENST00000428287ENST00000430328ENST00000444746ENST00000453091ENSG00000123610ENST00000243347ENST00000460812ENSG00000242113ENST00000498656CIL_0003S5_0003ENSMUSG00000036202ENSMUST00000069794ENSMUST00000112693ENSMUST00000125322ENSMUST00000125376ENSMUST00000126218ENSMUST00000145130ENSMUST00000152178ENSMUSG00000053475ENSMUST00000065927
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000062650 ENSDART00000090816 N/A N/A N/A 1.518±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000110992 N/A N/A N/A N/A N/A N/A N/A N/A 0.163±0.00 N/A 0.387±0.00 N/A N/A N/A
ENSDART00000143972 N/A N/A N/A 2.030±1.49 N/A N/A 0.896±0.00 2.205±2.01 N/A N/A N/A N/A N/A N/A
ENSDARG00000093440 ENSDART00000090875 N/A N/A N/A 0.375±0.16 N/A N/A 3.116±1.23 1.841±0.33 0.140±0.00 N/A 0.323±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000080345 ENST00000243326 1.533±0.00 0.675±0.00 N/A 1.282±0.00 2.164±0.66 1.769±0.67 0.760±0.16 N/A 0.177±0.00 2.929±0.00 N/A 2.465±2.24 0.775±0.00 2.177±1.09
ENST00000414861 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000428287 N/A N/A N/A N/A N/A N/A N/A 1.198±0.00 N/A 1.981±0.00 N/A N/A N/A N/A
ENST00000430328 N/A N/A N/A N/A N/A N/A N/A N/A 2.988±0.00 N/A N/A N/A N/A N/A
ENST00000444746 N/A N/A N/A 1.176±0.00 N/A 2.186±0.00 0.900±0.00 N/A 3.727±0.00 1.911±0.00 N/A 7.052±0.00 N/A N/A
ENST00000453091 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.871±0.00 5.985±0.00
ENST00000454583 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457745 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467762 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484077 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494333 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498041 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000123610 ENST00000243347 0.699±0.00 0.266±0.00 0.076±0.00 0.810±0.19 4.946±0.00 0.565±0.27 0.504±0.36 0.044±0.00 0.845±0.60 6.098±4.34 0.132±0.00 0.478±0.24 0.278±0.05 1.827±0.57
ENST00000460812 0.309±0.00 N/A N/A N/A 1.685±0.00 0.727±0.00 0.180±0.00 0.039±0.00 N/A N/A N/A N/A N/A 2.867±0.00
ENSG00000242113 ENST00000498656 N/A N/A N/A N/A 0.750±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000036202 ENSMUST00000069794 0.108±0.00 0.205±0.04 N/A N/A 0.310±0.21 0.715±0.00 0.255±0.00 0.412±0.00 0.926±0.50 N/A 0.313±0.06 1.737±0.88 1.297±0.57 2.625±0.00
ENSMUST00000112693 0.320±0.24 0.225±0.00 0.776±0.18 2.019±0.54 0.417±0.37 0.387±0.00 0.246±0.00 0.250±0.07 1.892±1.38 0.502±0.17 0.321±0.06 1.060±0.18 1.044±0.59 1.807±0.78
ENSMUST00000125116 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125322 N/A N/A 0.926±0.21 3.564±0.00 N/A N/A N/A N/A N/A N/A 0.783±0.28 6.107±3.23 2.495±2.18 25.418±0.00
ENSMUST00000125376 0.178±0.00 N/A 0.993±0.27 N/A 0.459±0.13 N/A N/A 0.244±0.00 1.207±0.75 N/A 0.432±0.00 1.930±0.00 1.292±0.00 N/A
ENSMUST00000126218 N/A 6.739±1.53 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145130 N/A 0.579±0.00 N/A N/A N/A N/A N/A 0.599±0.00 N/A 0.933±0.00 N/A N/A N/A N/A
ENSMUST00000152178 N/A N/A 3.049±0.70 3.789±0.93 N/A N/A N/A N/A 3.006±1.85 N/A 0.852±0.24 N/A 2.623±0.95 2.571±0.00
ENSMUSG00000053475 ENSMUST00000065927 3.137±1.78 0.152±0.06 0.942±0.28 2.087±0.95 3.592±0.87 0.374±0.20 0.350±0.07 0.168±0.11 0.120±0.04 0.424±0.10 0.407±0.09 1.638±0.76 0.115±0.13 0.306±0.14

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