C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gamma-aminobutyric acid (GABA) A receptor, subunit alpha 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000068456 Gabra5-201 ENSMUSG00000055078 10090 - 7:57407690-57510009 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastKidneyLiverLungOvaryPlacentaTestisENSMUST00000068456
Transcript ID Adipose Bladder Brain Breast Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000068456 0.018±0.01 0.003±0.00 1.840±0.31 0.031±0.00 0.026±0.00 0.009±0.01 0.019±0.00 0.070±0.04 0.012±0.01 0.191±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006LH CIL_0006LH_0002 CGP 7:57407690-57828802

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001662 IMP behavioral fear response
GO:0004890 IEA GABA-A receptor activity
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005254 IEA chloride channel activity
GO:0005515 IPI protein binding
GO:0007214 IEA gamma-aminobutyric acid signaling pathway
GO:0007268 IEA synaptic transmission
GO:0007420 IEA brain development
GO:0007605 IMP sensory perception of sound
GO:0008306 IMP associative learning
GO:0030054 IEA cell junction
GO:0030425 IDA dendrite
GO:0032809 IEA neuronal cell body membrane
GO:0034707 IEA chloride channel complex
GO:0043235 IEA receptor complex
GO:0043523 IMP regulation of neuron apoptotic process
GO:0043524 IMP negative regulation of neuron apoptotic process
GO:0044297 IDA cell body
GO:0045211 IEA postsynaptic membrane
GO:0048666 IMP neuron development
GO:0050811 IEA GABA receptor binding
GO:0060119 IMP inner ear receptor cell development
GO:0060384 IMP innervation
GO:0090102 IMP cochlea development
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000100000 gabra1-201 protein_coding Danio_rerio 0 525
ENSDART00000144767 gabra1-001 protein_coding Danio_rerio 4e-36 158
ENST00000335625 GABRA5-001 protein_coding Homo_sapiens 0 1853
ENST00000355395 GABRA5-002 protein_coding Homo_sapiens 0 1788
ENST00000400081 GABRA5-201 protein_coding Homo_sapiens 0 1853

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