C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0006LH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000070730-ENSDARG00000023771 CGP 7955 6:38297800-38444389
GeneTranscriptPositionBiotype
ENSDARG00000023771 (gabrb3)
gamma-aminobutyric acid (GABA) A receptor, beta 3
ENSDART00000087300 (gabrb3-001) 38312821-38444389 protein_coding
ENSDART00000148678 (gabrb3-002) 38358221-38407825 protein_coding
ENSDARG00000070730 (gabra5)
gamma-aminobutyric acid (GABA) A receptor, alpha 5
ENSDART00000104135 (gabra5-201) 38297800-38349412 protein_coding
ENSDART00000138026 (gabra5-001) 38297800-38350182 protein_coding
ENSDART00000144106 (gabra5-002) 38297960-38357806 processed_transcript
ENSDARG00000085224 (5S_rRNA)
5S ribosomal RNA
ENSDART00000120624 (5S_rRNA.1076-201) 38307955-38308075 rRNA
CIL_0006LH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000055078-ENSMUSG00000033676 CGP 10090 7:57407690-57828802
GeneTranscriptPositionBiotype
ENSMUSG00000033676 (Gabrb3)
gamma-aminobutyric acid (GABA) A receptor, subunit beta 3
ENSMUST00000039697 (Gabrb3-001) 57591162-57828802 protein_coding
ENSMUST00000085240 (Gabrb3-002) 57590518-57828802 protein_coding
ENSMUST00000136033 (Gabrb3-005) 57792128-57816315 retained_intron
ENSMUST00000138350 (Gabrb3-004) 57591530-57816370 protein_coding
ENSMUST00000156375 (Gabrb3-003) 57591162-57765781 retained_intron
ENSMUSG00000055048 (Gm9962)
predicted gene 9962
ENSMUST00000085241 (Gm9962-201) 57387304-57408879 antisense
ENSMUST00000186595 (Gm9962-001) 57387272-57409941 antisense
ENSMUSG00000055078 (Gabra5)
gamma-aminobutyric acid (GABA) A receptor, subunit alpha 5
ENSMUST00000068456 (Gabra5-201) 57407690-57510009 protein_coding
ENSMUSG00000099203 (Mir6389)
microRNA 6389
ENSMUST00000183661 (Mir6389-201) 57581061-57581162 miRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006LH_0001ENSDARG00000023771ENSDART00000087300ENSDART00000148678ENSDARG00000070730ENSDART00000104135ENSDART00000138026ENSDART00000144106ENSDARG00000085224ENSDART00000120624CIL_0006LH_0002ENSMUSG00000033676ENSMUST00000039697ENSMUST00000085240ENSMUST00000136033ENSMUST00000138350ENSMUST00000156375ENSMUSG00000055048ENSMUST00000085241ENSMUST00000186595ENSMUSG00000055078ENSMUST00000068456ENSMUSG00000099203ENSMUST00000183661
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006LH_0001ENSDARG00000023771ENSDART00000087300ENSDART00000148678ENSDARG00000070730ENSDART00000104135ENSDART00000138026ENSDARG00000085224ENSDART00000120624CIL_0006LH_0002ENSMUSG00000033676ENSMUST00000039697ENSMUST00000085240ENSMUST00000136033ENSMUST00000138350ENSMUST00000156375ENSMUSG00000055048ENSMUST00000085241ENSMUST00000186595ENSMUSG00000055078ENSMUST00000068456ENSMUSG00000099203ENSMUST00000183661
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000023771 ENSDART00000087300 N/A N/A N/A 5.738±1.98 N/A N/A 0.485±0.40 0.079±0.04 N/A N/A N/A N/A N/A N/A
ENSDART00000148678 N/A N/A N/A 12.144±0.00 N/A N/A N/A N/A 0.069±0.00 N/A N/A N/A N/A N/A
ENSDARG00000070730 ENSDART00000104135 N/A N/A N/A N/A N/A N/A 0.247±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000138026 N/A N/A N/A 10.052±0.00 N/A N/A 0.059±0.00 N/A N/A N/A 0.883±0.00 N/A N/A N/A
ENSDART00000144106 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000085224 ENSDART00000120624 N/A N/A N/A 75.271±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000033676 ENSMUST00000039697 0.077±0.10 0.408±0.22 0.069±0.03 12.873±2.81 0.008±0.01 0.119±0.03 0.013±0.01 2.187±0.32 0.039±0.02 0.062±0.00 0.006±0.00 0.125±0.05 0.025±0.01 0.199±0.02
ENSMUST00000085240 0.070±0.09 N/A 0.081±0.00 4.156±0.43 0.015±0.01 0.145±0.02 0.033±0.02 0.402±0.00 0.034±0.02 0.019±0.00 0.006±0.00 0.129±0.04 0.045±0.02 0.092±0.01
ENSMUST00000136033 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.247±0.06 0.088±0.00 N/A
ENSMUST00000138350 N/A 0.677±0.09 N/A N/A N/A 0.163±0.00 N/A N/A 0.324±0.10 N/A N/A 0.460±0.00 N/A 0.903±0.00
ENSMUST00000156375 0.653±0.00 1.620±0.29 N/A N/A N/A 0.220±0.05 N/A 1.553±0.00 0.136±0.00 0.057±0.01 N/A 0.427±0.21 N/A N/A
ENSMUSG00000055048 ENSMUST00000085241 N/A N/A 0.033±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.217±0.00 N/A N/A
ENSMUST00000186595 0.028±0.00 N/A 0.014±0.00 N/A 0.073±0.03 N/A N/A N/A 0.006±0.00 N/A N/A 0.141±0.00 0.009±0.00 N/A
ENSMUSG00000055078 ENSMUST00000068456 0.018±0.01 N/A 0.003±0.00 1.840±0.31 0.031±0.00 N/A N/A 0.026±0.00 0.009±0.01 0.019±0.00 N/A 0.070±0.04 0.012±0.01 0.191±0.14
ENSMUSG00000099203 ENSMUST00000183661 N/A N/A N/A 54.287±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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