C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gamma-aminobutyric acid (GABA) A receptor, alpha 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000355395 GABRA5-002 ENSG00000186297 9606 + 15:26866911-26948752 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLungOvaryPlacentaTestisENST00000355395
Transcript ID Adrenal Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000355395 0.021±0.00 0.099±0.09 0.013±0.00 0.023±0.00 0.046±0.00 0.067±0.00 0.083±0.00 0.017±0.00 0.296±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 TAS receptor activity
GO:0005215 TAS transporter activity
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005254 IEA chloride channel activity
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006810 TAS:IEA transport
GO:0006811 IEA ion transport
GO:0006821 IEA chloride transport
GO:0007165 IEA:TAS signal transduction
GO:0007214 IEA gamma-aminobutyric acid signaling pathway
GO:0007268 TAS synaptic transmission
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0034220 IEA:TAS ion transmembrane transport
GO:0034707 IEA chloride channel complex
GO:0045211 IEA postsynaptic membrane
GO:0055085 TAS transmembrane transport
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000068456 Gabra5-201 protein_coding Mus_musculus 0 1788
ENSDART00000044678 CABZ01072856.1-201 protein_coding Danio_rerio 0 612
ENSDART00000124708 gabra6b-201 protein_coding Danio_rerio 0 342
ENSDART00000054982 gabra6a-201 protein_coding Danio_rerio 5e-24 117
ENSDART00000147681 gabra6a-002 retained_intron Danio_rerio 5e-24 117
ENSDART00000082697 gabra6a-001 protein_coding Danio_rerio 6e-23 113

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