C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: snurportin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000068856 Snupn-001 ENSMUSG00000055334 10090 + 9:56950878-56983206 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000068856
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000068856 4.245±0.72 4.747±1.79 4.787±0.62 7.286±2.15 3.764±0.12 3.587±0.49 3.074±0.46 4.302±0.46 3.498±0.72 3.211±0.42 4.363±0.35 4.769±1.74 9.094±3.28 10.449±4.29

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006606 IEA protein import into nucleus
GO:0008565 IEA protein transporter activity
GO:0061015 IEA snRNA import into nucleus
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000308588 SNUPN-001 protein_coding Homo_sapiens 0 1354
ENST00000563793 SNUPN-008 protein_coding Homo_sapiens 0 259
ENST00000564086 SNUPN-005 protein_coding Homo_sapiens 0 562
ENST00000564644 SNUPN-002 protein_coding Homo_sapiens 0 1354
ENST00000564675 SNUPN-003 protein_coding Homo_sapiens 0 1354
ENST00000567134 SNUPN-004 protein_coding Homo_sapiens 0 1352
ENST00000567437 SNUPN-011 retained_intron Homo_sapiens 0 438
ENST00000568078 SNUPN-010 protein_coding Homo_sapiens 0 782
ENST00000568162 SNUPN-009 protein_coding Homo_sapiens 0 392
ENST00000569817 SNUPN-006 protein_coding Homo_sapiens 0 861

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