C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcription elongation factor B (SIII), polypeptide 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000069579 Tceb2-201 ENSMUSG00000055839 10090 - 17:23824740-23829109 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonHeartKidneyLiverMusclePlacentaTestisENSMUST00000069579
Transcript ID Adipose Brain Colon Heart Kidney Liver Muscle Placenta Testis
ENSMUST00000069579 257.027±0.00 446.477±0.00 346.536±36.06 180.090±39.39 298.536±19.25 205.093±83.94 325.200±33.77 378.833±186.93 331.824±36.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000JU CIL_0000JU_0002 CGP 17:23790662-23829109
CIL_0000JV CIL_0000JV_0002 CGP 17:23824740-23836056

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016567 IEA protein ubiquitination
GO:0031462 IEA Cul2-RING ubiquitin ligase complex
GO:0031466 IEA Cul5-RING ubiquitin ligase complex
GO:0031625 IEA ubiquitin protein ligase binding
GO:0070062 IEA extracellular vesicular exosome
GO:0070449 IDA elongin complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262306 TCEB2-002 protein_coding Homo_sapiens 0 488
ENST00000409477 TCEB2-003 protein_coding Homo_sapiens 0 486
ENST00000409906 TCEB2-001 protein_coding Homo_sapiens 0 503
ENST00000447693 TCEB2P1-001 processed_pseudogene Homo_sapiens 0 383
ENST00000494946 TCEB2-004 protein_coding Homo_sapiens 0 279
ENST00000526184 TCEB2P2-001 processed_pseudogene Homo_sapiens 0 401
ENST00000572954 TCEB2-005 protein_coding Homo_sapiens 0 228

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