C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000262306 TCEB2-002 ENSG00000103363 9606 - 16:2771414-2777277 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverOvaryPlacentaTestisENST00000262306
Transcript ID Liver Ovary Placenta Testis
ENST00000262306 155.364±0.00 1075.460±0.00 156.870±16.18 366.455±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000JU CIL_0000JU_0001 CGP 16:2752329-2777297
CIL_0000JV CIL_0000JV_0001 CGP 16:2771414-2787948

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005654 TAS nucleoplasm
GO:0005829 TAS cytosol
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0006461 TAS protein complex assembly
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0016567 IEA protein ubiquitination
GO:0031462 IDA Cul2-RING ubiquitin ligase complex
GO:0031466 IDA Cul5-RING ubiquitin ligase complex
GO:0031625 IDA ubiquitin protein ligase binding
GO:0050434 TAS positive regulation of viral transcription
GO:0061418 TAS regulation of transcription from RNA polymerase II promoter in response to hypoxia
GO:0070062 IDA extracellular vesicular exosome
GO:0070449 IEA elongin complex
GO:0071456 TAS cellular response to hypoxia

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000069579 Tceb2-201 protein_coding Mus_musculus 0 488
ENSMUST00000119257 Gm11598-001 processed_pseudogene Mus_musculus 0 425

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