C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: suppressor of cytokine signaling 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000070116 Socs6-001 ENSMUSG00000056153 10090 - 18:88865169-88894322 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000070116
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000070116 1.487±0.24 1.718±0.00 2.420±0.39 2.488±0.38 1.359±0.46 1.783±0.01 0.692±0.16 0.851±0.08 0.763±0.31 1.102±0.23 2.416±0.40 1.446±0.49 1.747±1.05 0.347±0.02

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001772 IEA immunological synapse
GO:0005515 IPI protein binding
GO:0005829 TAS cytosol
GO:0009968 IEA negative regulation of signal transduction
GO:0010498 IEA proteasomal protein catabolic process
GO:0016567 IEA protein ubiquitination
GO:0035556 IEA intracellular signal transduction
GO:0040008 IMP regulation of growth
GO:0050868 IDA negative regulation of T cell activation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000081449 BX640518.1-201 protein_coding Danio_rerio 0 407
ENST00000397942 SOCS6-001 protein_coding Homo_sapiens 0 1940
ENST00000398297 AL590763.5-001 processed_pseudogene Homo_sapiens 0 414
ENST00000528055 RP11-160H12.3-001 processed_pseudogene Homo_sapiens 0 941
ENST00000582322 SOCS6-002 protein_coding Homo_sapiens 0 1938

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