C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CCR4-NOT transcription complex, subunit 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000070117 Cnot10-201 ENSMUSG00000056167 10090 - 9:114585878-114640200 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000070117
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000070117 10.308±2.66 5.642±2.18 10.263±0.45 9.984±4.76 5.546±2.46 9.700±2.14 4.131±1.04 7.792±1.42 6.377±4.36 8.932±3.63 4.509±0.44 8.302±3.48 9.530±2.16 12.552±4.25

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006417 IEA regulation of translation
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0030014 ISS CCR4-NOT complex
GO:0031047 IEA gene silencing by RNA

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000328834 CNOT10-001 protein_coding Homo_sapiens 0 2817
ENST00000331889 CNOT10-003 protein_coding Homo_sapiens 0 1890
ENST00000416457 CNOT10-004 nonsense_mediated_decay Homo_sapiens 0 1705
ENST00000430408 CNOT10-012 protein_coding Homo_sapiens 0 601
ENST00000435630 CNOT10-002 nonsense_mediated_decay Homo_sapiens 0 1423
ENST00000454516 CNOT10-201 protein_coding Homo_sapiens 0 2676
ENST00000455381 CNOT10-010 nonsense_mediated_decay Homo_sapiens 0 750
ENST00000463006 CNOT10-007 processed_transcript Homo_sapiens 0 479
ENST00000463697 CNOT10-011 processed_transcript Homo_sapiens 0 673
ENST00000466103 CNOT10-009 processed_transcript Homo_sapiens 0 372
ENST00000471003 CNOT10-013 processed_transcript Homo_sapiens 0 667
ENST00000479397 CNOT10-014 retained_intron Homo_sapiens 0 326
ENST00000485136 CNOT10-008 retained_intron Homo_sapiens 0 658
ENST00000494439 CNOT10-006 processed_transcript Homo_sapiens 0 416
ENST00000556853 CNOT10-019 processed_transcript Homo_sapiens 0 416

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