C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type VIII, alpha 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000070132 Col8a2-001 ENSMUSG00000056174 10090 + 4:126286793-126314330 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000070132
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000070132 1.248±0.94 1.174±0.06 10.427±0.34 0.922±0.33 0.225±0.05 1.458±0.12 0.273±0.06 0.144±0.02 0.160±0.09 2.077±0.17 0.543±0.21 3.039±0.69 0.690±0.53 0.203±0.09

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0005581 IEA collagen trimer
GO:0005604 IEA basement membrane
GO:0007155 IEA cell adhesion
GO:0031012 IEA extracellular matrix
GO:0048593 IGI camera-type eye morphogenesis
GO:0050673 IGI epithelial cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000303143 COL8A2-001 protein_coding Homo_sapiens 0 2545
ENST00000397799 COL8A2-003 protein_coding Homo_sapiens 0 2623
ENST00000481785 COL8A2-002 protein_coding Homo_sapiens 0 2346
ENST00000615990 COL8A2-201 protein_coding Homo_sapiens 0 704

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