C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type VIII, alpha 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000303143 COL8A2-001 ENSG00000171812 9606 - 1:36095236-36100249 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyLiverOvaryPlacentaTestisENST00000303143
Transcript ID Adrenal Brain Breast Colon Kidney Liver Ovary Placenta Testis
ENST00000303143 4.042±0.00 0.967±0.00 2.057±1.89 0.580±0.41 0.382±0.00 2.335±0.00 2.069±2.26 5.258±0.43 3.718±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004JJ CIL_0004JJ_0002 CGP 1:36095236-36156053

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0005201 NAS extracellular matrix structural constituent
GO:0005515 IEA protein binding
GO:0005576 IEA:TAS extracellular region
GO:0005578 NAS proteinaceous extracellular matrix
GO:0005581 IEA collagen trimer
GO:0005604 NAS basement membrane
GO:0005788 TAS endoplasmic reticulum lumen
GO:0016337 NAS single organismal cell-cell adhesion
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 NAS extracellular matrix organization
GO:0030574 TAS collagen catabolic process
GO:0030674 NAS protein binding, bridging
GO:0031012 IDA extracellular matrix

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000070132 Col8a2-001 protein_coding Mus_musculus 0 2545

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