C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PQ loop repeat containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000070135 Pqlc1-003 ENSMUSG00000034006 10090 + 18:80256318-80292712 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000070135
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000070135 10.362±4.05 10.509±5.36 6.158±0.73 3.906±1.74 14.176±4.73 19.020±3.39 25.868±4.62 41.351±20.43 21.843±7.05 1.581±0.65 21.535±5.66 1.771±0.17 10.189±5.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Y9 CIL_0007Y9_0002 VISTA 18:80030119-80632361
CIL_0001P3 CIL_0001P3_0002 CGP 18:80253292-80364254

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000351365 PQLC1-003 nonsense_mediated_decay Homo_sapiens 0 514
ENST00000357575 PQLC1-009 protein_coding Homo_sapiens 0 830
ENST00000397778 PQLC1-001 protein_coding Homo_sapiens 0 514
ENST00000466449 PQLC1-002 retained_intron Homo_sapiens 0 512
ENST00000469369 PQLC1-007 processed_transcript Homo_sapiens 0 446
ENST00000494607 PQLC1-005 processed_transcript Homo_sapiens 0 248
ENST00000589000 PQLC1-013 processed_transcript Homo_sapiens 0 353
ENST00000591964 PQLC1-011 nonsense_mediated_decay Homo_sapiens 0 241

Loading