C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syndecan 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000070478 Sdc3-001 ENSMUSG00000025743 10090 + 4:130792537-130826319 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000070478
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000070478 20.565±2.82 159.529±7.83 20.331±5.10 34.979±11.20 26.123±3.33 15.732±0.96 10.943±1.67 10.155±0.68 9.802±3.45 39.061±4.17 1.113±0.09 29.163±5.48 4.331±1.83 7.081±0.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002AF CIL_0002AF_0002 CGP 4:130663321-130826319

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005796 TAS Golgi lumen
GO:0005886 TAS plasma membrane
GO:0008092 IEA cytoskeletal protein binding
GO:0016020 IEA:ISS membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000254351 SDC1-001 protein_coding Homo_sapiens 0.000000000003 79
ENST00000336798 SDC3-001 protein_coding Homo_sapiens 7e-22 111
ENST00000381150 SDC1-201 protein_coding Homo_sapiens 0.000000000004 79

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