C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002AF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000023145-ENSDARG00000088962 CGP 7955 19:44640552-44782072
GeneTranscriptPositionBiotype
ENSDARG00000080694 (SNORA5)
Small nucleolar RNA SNORA5 		ENSDART00000118516 (SNORA5.2-201) 44683820-44683955 snoRNA
ENSDARG00000088962 (sdc3)
syndecan 3 		ENSDART00000123250 (sdc3-201) 44700468-44782072 protein_coding
CIL_0002AF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000028580-ENSMUSG00000025743 CGP 10090 4:130663321-130826319
GeneTranscriptPositionBiotype
ENSMUSG00000025743 (Sdc3)
syndecan 3 		ENSMUST00000070478 (Sdc3-001) 130792537-130826319 protein_coding
ENSMUST00000140623 (Sdc3-002) 130816845-130822250 retained_intron
ENSMUST00000141297 (Sdc3-004) 130814304-130819059 protein_coding
ENSMUST00000146093 (Sdc3-003) 130792704-130817273 retained_intron
ENSMUST00000152591 (Sdc3-005) 130811938-130819059 protein_coding
ENSMUSG00000028580 (Pum1)
pumilio RNA-binding family member 1 		ENSMUST00000030315 (Pum1-001) 130663321-130781564 protein_coding
ENSMUST00000097862 (Pum1-004) 130663406-130780254 protein_coding
ENSMUST00000097864 (Pum1-003) 130663386-130780266 protein_coding
ENSMUST00000105991 (Pum1-201) 130663359-130781562 protein_coding
ENSMUST00000105992 (Pum1-202) 130663359-130781562 protein_coding
ENSMUST00000122847 (Pum1-002) 130663366-130718881 retained_intron
ENSMUST00000143277 (Pum1-005) 130663367-130747003 protein_coding
ENSMUSG00000086548 (Gm12972)
predicted gene 12972 		ENSMUST00000152986 (Gm12972-001) 130786069-130787855 lincRNA
ENSMUSG00000087449 (Gm12971)
predicted gene 12971 		ENSMUST00000154720 (Gm12971-001) 130758563-130762379 sense_intronic
ENSMUSG00000087451 (Gm12970)
predicted gene 12970 		ENSMUST00000134911 (Gm12970-001) 130811617-130812326 antisense
ENSMUSG00000097158 (Gm26516)
predicted gene, 26516 		ENSMUST00000180943 (Gm26516-201) 130774817-130779246 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002AF_0001ENSDARG00000080694ENSDART00000118516ENSDARG00000088962ENSDART00000123250CIL_0002AF_0002ENSMUSG00000025743ENSMUST00000070478ENSMUST00000140623ENSMUST00000141297ENSMUST00000146093ENSMUST00000152591ENSMUSG00000028580ENSMUST00000030315ENSMUST00000097862ENSMUST00000097864ENSMUST00000105991ENSMUST00000105992ENSMUST00000122847ENSMUST00000143277ENSMUSG00000086548ENSMUST00000152986ENSMUSG00000087449ENSMUST00000154720ENSMUSG00000087451ENSMUST00000134911ENSMUSG00000097158ENSMUST00000180943
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002AF_0001ENSDARG00000080694ENSDART00000118516ENSDARG00000088962ENSDART00000123250CIL_0002AF_0002ENSMUSG00000025743ENSMUST00000070478ENSMUST00000152591ENSMUSG00000028580ENSMUST00000030315ENSMUST00000097862ENSMUST00000097864ENSMUST00000105991ENSMUST00000105992ENSMUSG00000086548ENSMUST00000152986ENSMUSG00000087449ENSMUST00000154720ENSMUSG00000087451ENSMUST00000134911ENSMUSG00000097158ENSMUST00000180943
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000080694 ENSDART00000118516 N/A N/A N/A 44.401±0.00 N/A N/A N/A 60.484±31.59 N/A N/A N/A N/A N/A N/A
ENSDARG00000088962 ENSDART00000123250 N/A N/A N/A 9.707±2.57 N/A N/A 1.796±0.85 2.550±0.69 0.211±0.00 N/A 0.970±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025743 ENSMUST00000070478 20.565±2.82 159.529±7.83 20.331±5.10 34.979±11.20 26.123±3.33 15.732±0.96 10.943±1.67 10.155±0.68 9.802±3.45 39.061±4.17 1.113±0.09 29.163±5.48 4.331±1.83 7.081±0.38
ENSMUST00000140623 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141297 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146093 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152591 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 38.667±0.00 N/A N/A
ENSMUSG00000028580 ENSMUST00000030315 11.801±0.52 16.539±1.38 5.910±0.03 11.632±2.17 7.083±3.39 2.867±0.37 4.504±0.07 6.526±0.76 5.350±1.36 8.278±1.45 2.076±1.14 4.857±2.53 7.516±0.75 8.675±3.11
ENSMUST00000097862 8.056±0.00 11.917±2.61 N/A N/A 4.252±1.54 9.319±0.55 4.527±2.02 3.472±0.00 2.212±0.00 6.509±0.00 1.767±0.50 5.611±0.00 N/A 9.408±2.57
ENSMUST00000097864 11.562±4.98 10.574±3.54 2.923±0.40 7.530±2.20 9.133±3.75 7.290±2.13 5.760±0.37 6.927±1.69 4.326±2.09 8.031±0.40 1.596±0.00 13.393±2.92 6.311±4.14 13.991±2.17
ENSMUST00000105991 N/A N/A 5.065±0.34 13.183±3.56 N/A 4.182±0.00 2.293±0.00 3.578±0.00 4.565±0.58 N/A 1.112±0.25 5.261±0.00 5.661±0.30 N/A
ENSMUST00000105992 7.396±4.38 10.349±1.98 3.547±0.11 12.431±0.83 9.710±3.18 8.756±2.42 3.965±1.33 8.665±2.60 4.673±1.51 14.863±3.07 1.398±0.18 27.052±4.41 4.053±0.06 4.776±0.33
ENSMUST00000122847 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143277 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000086548 ENSMUST00000152986 N/A N/A 0.009±0.00 0.008±0.00 0.454±0.11 0.046±0.00 N/A 0.026±0.00 0.019±0.00 N/A 0.058±0.00 0.097±0.02 0.011±0.00 0.047±0.03
ENSMUSG00000087449 ENSMUST00000154720 0.206±0.07 N/A 0.080±0.03 0.391±0.05 0.377±0.18 0.222±0.01 0.179±0.00 0.161±0.06 0.176±0.11 0.198±0.10 0.126±0.02 0.367±0.20 0.140±0.03 0.108±0.00
ENSMUSG00000087451 ENSMUST00000134911 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 19.786±0.00
ENSMUSG00000097158 ENSMUST00000180943 0.637±0.11 0.382±0.17 0.713±0.10 1.136±0.49 0.877±0.20 0.706±0.31 0.175±0.10 0.389±0.07 0.547±0.27 0.508±0.17 0.118±0.06 1.189±0.57 0.722±0.20 0.186±0.06

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