C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neuronal pentraxin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000071782 Nptx2-201 ENSMUSG00000059991 10090 + 5:144545887-144557478 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000071782
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000071782 4.586±3.38 0.176±0.08 7.097±0.68 10.485±6.47 0.670±0.18 1.049±0.17 0.090±0.07 0.114±0.03 0.018±0.01 0.676±0.03 0.036±0.02 3.229±1.58 0.762±0.25 4.681±1.81

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00053A CIL_00053A_0002 CGP 5:144264526-144557478
CIL_0004TN CIL_0004TN_0002 CGP 5:144545887-144761649

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005576 IEA extracellular region
GO:0030246 IEA carbohydrate binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265634 NPTX2-001 protein_coding Homo_sapiens 0 1561
ENST00000466102 NPTX2-002 retained_intron Homo_sapiens 0 248

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