C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: T cell lymphoma invasion and metastasis 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000072156 Tiam2-201 ENSMUSG00000023800 10090 + 17:3397207-3519397 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryENSMUST00000072156
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary
ENSMUST00000072156 0.337±0.00 1.884±0.46 1.256±0.00 0.382±0.14 0.482±0.00 0.346±0.10 0.223±0.13 0.279±0.03 0.448±0.23 1.212±0.89

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00055J CIL_00055J_0002 CGP 17:3114972-3519397
CIL_00055I CIL_00055I_0002 CGP 17:3326573-3557713

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005057 IEA receptor signaling protein activity
GO:0005085 IDA guanyl-nucleotide exchange factor activity
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005096 IDA GTPase activator activity
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0016020 IDA membrane
GO:0032321 IEA positive regulation of Rho GTPase activity
GO:0035556 IEA intracellular signal transduction
GO:0042995 IEA cell projection
GO:0043547 IDA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000275246 TIAM2-010 protein_coding Homo_sapiens 0 1869
ENST00000318981 TIAM2-201 protein_coding Homo_sapiens 0 2558
ENST00000360366 TIAM2-009 protein_coding Homo_sapiens 0 4896
ENST00000456877 TIAM2-003 protein_coding Homo_sapiens 0 2514
ENST00000461783 TIAM2-005 protein_coding Homo_sapiens 0 2558
ENST00000462408 TIAM2-018 protein_coding Homo_sapiens 0 483
ENST00000528391 TIAM2-004 protein_coding Homo_sapiens 0 2832
ENST00000528535 TIAM2-006 protein_coding Homo_sapiens 0 2241
ENST00000529824 TIAM2-007 protein_coding Homo_sapiens 0 2228
ENST00000535583 TIAM2-017 protein_coding Homo_sapiens 0 460
ENST00000537845 TIAM2-022 retained_intron Homo_sapiens 0 555
ENST00000538270 TIAM2-014 protein_coding Homo_sapiens 0 270
ENST00000543712 TIAM2-019 nonsense_mediated_decay Homo_sapiens 0 374
ENST00000546145 TIAM2-021 retained_intron Homo_sapiens 0 359

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