C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: visinin-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000072299 Vsnl1-201 ENSMUSG00000054459 10090 - 12:11325247-11436649 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000072299
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000072299 0.051±0.02 5.108±1.27 0.106±0.03 31.876±30.79 0.229±0.14 0.051±0.00 0.166±0.09 0.060±0.03 0.042±0.03 5.165±1.05 0.029±0.01 0.160±0.11 0.092±0.08 0.040±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0019722 IEA calcium-mediated signaling

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000157125 vsnl1b-001 protein_coding Danio_rerio 0 551
ENSDART00000064672 vsnl1b-201 protein_coding Danio_rerio 0 549
ENSDART00000103506 hpcal4-001 protein_coding Danio_rerio 0 486
ENSDART00000031091 vsnl1a-201 protein_coding Danio_rerio 4e-19 100
ENSDART00000135284 vsnl1a-001 protein_coding Danio_rerio 4e-19 100
ENST00000295156 VSNL1-001 protein_coding Homo_sapiens 0 1969
ENST00000307845 HPCAL1-001 protein_coding Homo_sapiens 0 244
ENST00000373467 HPCA-001 protein_coding Homo_sapiens 0 209
ENST00000381765 HPCAL1-002 protein_coding Homo_sapiens 0 244
ENST00000404666 VSNL1-003 protein_coding Homo_sapiens 0 946
ENST00000406397 VSNL1-002 protein_coding Homo_sapiens 0 1648
ENST00000419810 HPCAL1-003 nonsense_mediated_decay Homo_sapiens 0 244
ENST00000480118 HPCA-005 processed_transcript Homo_sapiens 0 209
ENST00000613496 HPCAL1-201 protein_coding Homo_sapiens 0 244
ENST00000620771 HPCAL1-202 protein_coding Homo_sapiens 0 244
ENST00000622018 HPCAL1-203 protein_coding Homo_sapiens 0 244

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