C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hydrogen voltage-gated channel 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000072602 Hvcn1-001 ENSMUSG00000064267 10090 + 5:122209729-122242297 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000072602
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000072602 10.438±2.07 3.246±0.24 2.681±0.35 24.265±5.13 3.569±0.36 0.984±0.20 3.753±0.92 1.283±1.13 7.924±0.19 2.234±2.08 4.669±0.70 4.895±0.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TJ CIL_0008TJ_0002 VISTA 5:121625608-122227679
CIL_000903 CIL_000903_0002 VISTA 5:121732502-122333355
CIL_0008YU CIL_0008YU_0002 VISTA 5:121792218-122394768
CIL_0004PJ CIL_0004PJ_0002 CGP 5:122206804-122264460

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005887 ISS integral component of plasma membrane
GO:0009268 IDA response to pH
GO:0010043 IDA response to zinc ion
GO:0015992 IDA proton transport
GO:0016021 IC integral component of membrane
GO:0030171 IDA voltage-gated proton channel activity
GO:0034220 IEA ion transmembrane transport
GO:0034765 IEA regulation of ion transmembrane transport
GO:0071294 ISS cellular response to zinc ion
GO:0071467 ISS cellular response to pH

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000242607 HVCN1-003 protein_coding Homo_sapiens 0 584
ENST00000356742 HVCN1-001 protein_coding Homo_sapiens 0 584
ENST00000439744 HVCN1-004 protein_coding Homo_sapiens 0 580
ENST00000548312 HVCN1-002 protein_coding Homo_sapiens 0 529
ENST00000549442 HVCN1-007 protein_coding Homo_sapiens 0 429
ENST00000620084 HVCN1-201 protein_coding Homo_sapiens 0 584

Loading