C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 39 (zinc transporter), member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000073428 Slc39a4-201 ENSMUSG00000063354 10090 - 15:76612385-76616852 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000073428
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000073428 20.415±20.21 0.912±0.38 0.722±0.01 0.078±0.03 1.907±0.85 86.249±2.01 0.571±0.48 0.443±0.09 26.428±13.67 46.254±4.87 0.050±0.03 25.588±8.42 30.749±20.90 0.797±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SS CIL_0007SS_0002 VISTA 15:76102685-76704351
CIL_00026S CIL_00026S_0002 CGP 15:76595809-76616852

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005385 IDA zinc ion transmembrane transporter activity
GO:0005768 IDA endosome
GO:0005886 IDA plasma membrane
GO:0006829 IDA zinc ion transport
GO:0006882 IDA cellular zinc ion homeostasis
GO:0016021 IEA integral component of membrane
GO:0016023 IDA cytoplasmic membrane-bounded vesicle
GO:0016324 IDA apical plasma membrane
GO:0034224 IDA cellular response to zinc ion starvation
GO:0070062 IEA extracellular vesicular exosome
GO:0071577 IDA zinc ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000276833 SLC39A4-002 protein_coding Homo_sapiens 0 523
ENST00000301305 SLC39A4-001 protein_coding Homo_sapiens 0 523
ENST00000527148 SLC39A4-009 processed_transcript Homo_sapiens 0 438
ENST00000529462 SLC39A4-005 retained_intron Homo_sapiens 2e-34 152
ENST00000530807 SLC39A4-007 processed_transcript Homo_sapiens 0 278
ENST00000531013 SLC39A4-006 processed_transcript Homo_sapiens 0 422
ENST00000532718 SLC39A4-004 processed_transcript Homo_sapiens 0 462

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