C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SET and MYND domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000074301 Smyd1-001 ENSMUSG00000055027 10090 - 6:71213940-71262281 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000074301
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000074301 0.471±0.07 0.086±0.00 0.061±0.03 0.220±0.08 9.985±5.96 66.038±4.99 0.379±0.32 0.253±0.23 2.034±0.74 74.499±7.01 0.161±0.00 0.084±0.01 0.325±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004Q7 CIL_0004Q7_0002 CGP 6:71199827-71322233

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006338 IPI chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0007507 IMP heart development
GO:0010831 IEA positive regulation of myotube differentiation
GO:0018024 IEA histone-lysine N-methyltransferase activity
GO:0034968 IEA histone lysine methylation
GO:0035914 IMP skeletal muscle cell differentiation
GO:0045663 IEA positive regulation of myoblast differentiation
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000419482 SMYD1-001 protein_coding Homo_sapiens 0 1936
ENST00000438570 SMYD1-003 protein_coding Homo_sapiens 0 392
ENST00000444564 SMYD1-002 protein_coding Homo_sapiens 0 961
ENST00000468008 SMYD1-004 processed_transcript Homo_sapiens 0 558

Loading