C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein 70 (U1)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000074575 Snrnp70-201 ENSMUSG00000063511 10090 - 7:45376462-45395692 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000074575
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000074575 26.821±3.48 95.556±3.09 183.883±80.03 24.205±1.36 30.687±0.00 17.876±6.43 30.013±5.03 87.585±54.44 26.372±3.48 21.588±5.27 96.727±118.32 132.304±77.65 68.125±40.39

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 ISS mRNA splicing, via spliceosome
GO:0003723 ISS RNA binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005681 ISS spliceosomal complex
GO:0005685 ISS U1 snRNP
GO:0043484 ISS regulation of RNA splicing
GO:0044822 IEA poly(A) RNA binding
GO:0048026 IMP positive regulation of mRNA splicing, via spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000221448 SNRNP70-003 protein_coding Homo_sapiens 0 1046
ENST00000401730 SNRNP70-004 nonsense_mediated_decay Homo_sapiens 0 664
ENST00000544278 SNRNP70-006 retained_intron Homo_sapiens 0 303
ENST00000595231 SNRNP70-005 nonsense_mediated_decay Homo_sapiens 0 641
ENST00000598441 SNRNP70-001 protein_coding Homo_sapiens 0 1210
ENST00000598984 SNRNP70-007 protein_coding Homo_sapiens 0 429
ENST00000599687 SNRNP70-010 retained_intron Homo_sapiens 0 472
ENST00000601065 SNRNP70-002 nonsense_mediated_decay Homo_sapiens 0 664
ENST00000601411 SNRNP70-009 protein_coding Homo_sapiens 0 202

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