C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: extraembryonic, spermatogenesis, homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000074698 Esx1-002 ENSMUSG00000023443 10090 - X:137115397-137120326 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartPlacentaTestisENSMUST00000074698
Transcript ID Heart Placenta Testis
ENSMUST00000074698 0.029±0.00 3.536±0.12 2.399±1.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006A4 CIL_0006A4_0002 CGP X:137049594-137122083
CIL_0006A5 CIL_0006A5_0002 CGP X:137115397-138846946

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000977 IEA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001227 IEA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0001568 IMP blood vessel development
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0043565 IEA sequence-specific DNA binding
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0051726 IEA regulation of cell cycle
GO:0060713 IMP labyrinthine layer morphogenesis
GO:0060716 IMP labyrinthine layer blood vessel development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263726 LHX4-001 protein_coding Homo_sapiens 0.0001 55
ENST00000372588 ESX1-001 protein_coding Homo_sapiens 0.00000000007 73
ENST00000415414 LHX4-AS1-005 processed_transcript Homo_sapiens 0.00001 57
ENST00000561113 LHX4-002 nonsense_mediated_decay Homo_sapiens 0.00001 55

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