C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine-rich repeats and immunoglobulin-like domains 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000074807 Lrig3-201 ENSMUSG00000020105 10090 + 10:125966219-126015359 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000074807
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000074807 6.646±4.42 2.597±0.42 2.562±0.16 1.598±0.34 3.373±0.82 22.239±8.22 0.377±0.15 3.460±0.40 0.983±0.43 5.126±0.45 0.650±0.12 5.293±1.73 1.566±0.68 0.610±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TE CIL_0008TE_0002 VISTA 10:125509054-126111061
CIL_0007V1 CIL_0007V1_0002 VISTA 10:125621037-126228970

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005615 IEA extracellular space
GO:0005886 IEA plasma membrane
GO:0016021 IEA integral component of membrane
GO:0031410 IEA cytoplasmic vesicle
GO:0032474 IGI otolith morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000320743 LRIG3-002 protein_coding Homo_sapiens 0 3395
ENST00000379141 LRIG3-001 protein_coding Homo_sapiens 0 3264
ENST00000433272 LRIG3-003 nonsense_mediated_decay Homo_sapiens 0 1855
ENST00000547329 LRIG3-009 retained_intron Homo_sapiens 0 346
ENST00000552646 LRIG3-007 retained_intron Homo_sapiens 0 405

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