C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000075132 Cdh12-001 ENSMUSG00000040452 10090 + 15:21111452-21589533 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonLiverLungMuscleOvaryPlacentaTestisENSMUST00000075132
Transcript ID Adipose Bladder Brain Colon Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000075132 0.022±0.01 0.007±0.00 0.834±0.43 0.050±0.00 0.005±0.00 0.022±0.00 0.005±0.00 0.084±0.05 0.003±0.00 0.376±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003XA CIL_0003XA_0003 CGP 15:21111452-23474418

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000382254 CDH12-001 protein_coding Homo_sapiens 0 3461
ENST00000504376 CDH12-002 protein_coding Homo_sapiens 0 3530
ENST00000504393 CDH12P2-001 unprocessed_pseudogene Homo_sapiens 0 403
ENST00000517378 CDH12-004 retained_intron Homo_sapiens 0 3131
ENST00000517835 CDH12P4-001 unprocessed_pseudogene Homo_sapiens 0 396
ENST00000517935 CDH12P3-001 unprocessed_pseudogene Homo_sapiens 0 401
ENST00000518209 CDH12-006 processed_transcript Homo_sapiens 0 326
ENST00000518435 CDH12P1-001 unprocessed_pseudogene Homo_sapiens 0 401
ENST00000521384 CDH12-005 processed_transcript Homo_sapiens 0 2357
ENST00000522262 CDH12-003 protein_coding Homo_sapiens 0 2259
ENST00000617567 RP11-974F13.1-001 unprocessed_pseudogene Homo_sapiens 0 396
ENST00000619694 CDH12-201 protein_coding Homo_sapiens 0 3482
ENST00000622377 CDH12P4-001 unprocessed_pseudogene Homo_sapiens 0 401

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