C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transthyretin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000075312 Ttr-201 ENSMUSG00000061808 10090 + 18:20665250-20674324 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000075312
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000075312 0.555±0.01 5.107±0.85 19.623±0.13 482.519±55.66 30.965±0.44 33.222±3.13 85.577±6.50 4269.243±2888.75 2.354±0.79 0.147±0.14 6.312±1.37 1357.799±1174.03 0.052±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003TY CIL_0003TY_0002 CGP 18:20558074-20674324

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005179 IEA hormone activity
GO:0005515 IPI protein binding
GO:0005615 IEA extracellular space
GO:0006810 IEA transport
GO:0042562 IEA hormone binding
GO:0042572 IEA retinol metabolic process
GO:0042802 IEA identical protein binding
GO:0043234 IEA protein complex
GO:0046982 IEA protein heterodimerization activity
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000237014 TTR-001 protein_coding Homo_sapiens 0 527
ENST00000610404 TTR-201 protein_coding Homo_sapiens 0 383
ENST00000613781 TTR-202 protein_coding Homo_sapiens 0 412

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