C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000075954 Taf1b-201 ENSMUSG00000059669 10090 + 12:24498581-24558571 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000075954
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000075954 2.941±1.02 2.275±0.62 8.178±0.34 5.916±2.50 1.031±0.33 1.178±0.40 1.809±0.68 2.219±1.05 2.816±1.27 2.810±1.13 2.066±0.21 4.931±2.29 6.414±0.78 11.713±2.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001MN CIL_0001MN_0002 CGP 12:24498581-24617391

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000120 TAS RNA polymerase I transcription factor complex
GO:0001164 ISS RNA polymerase I CORE element sequence-specific DNA binding
GO:0001187 ISS RNA polymerase I CORE element sequence-specific DNA binding transcription factor recruiting transcription factor activity
GO:0001189 ISS RNA polymerase I transcriptional preinitiation complex assembly at the promoter for the nuclear large rRNA transcript
GO:0005515 IPI protein binding
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006360 TAS transcription from RNA polymerase I promoter
GO:0046872 IEA metal ion binding
GO:0070062 IEA extracellular vesicular exosome
GO:0070860 IEA RNA polymerase I core factor complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263663 TAF1B-001 protein_coding Homo_sapiens 0 1362
ENST00000402170 TAF1B-009 processed_transcript Homo_sapiens 0 374
ENST00000404869 TAF1B-008 processed_transcript Homo_sapiens 0 215
ENST00000434858 TAF1B-002 nonsense_mediated_decay Homo_sapiens 0 867
ENST00000469895 TAF1B-003 processed_transcript Homo_sapiens 0 353
ENST00000480197 TAF1B-005 processed_transcript Homo_sapiens 0 342
ENST00000490432 TAF1B-004 processed_transcript Homo_sapiens 0 198

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