C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000076110 Rnf2-001 ENSMUSG00000026484 10090 - 1:151469406-151500955 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000076110
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000076110 5.785±1.64 6.961±1.25 12.317±2.32 15.422±12.91 5.104±1.36 4.264±0.74 2.382±0.06 4.638±1.01 6.153±3.52 5.106±0.57 3.994±0.26 8.277±1.57 18.010±8.22 6.657±1.30

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000151 ISS ubiquitin ligase complex
GO:0000278 IMP mitotic cell cycle
GO:0000791 IDA euchromatin
GO:0000792 IDA heterochromatin
GO:0001702 IMP gastrulation with mouth forming second
GO:0001739 IDA sex chromatin
GO:0003682 IDA chromatin binding
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008270 ISS zinc ion binding
GO:0009948 IMP anterior/posterior axis specification
GO:0016574 IGI histone ubiquitination
GO:0016604 IDA nuclear body
GO:0016874 IEA ligase activity
GO:0031519 IDA PcG protein complex
GO:0036353 IMP histone H2A-K119 monoubiquitination
GO:0071339 ISS MLL1 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000367509 RNF2-002 protein_coding Homo_sapiens 0 881
ENST00000367510 RNF2-001 protein_coding Homo_sapiens 0 1810
ENST00000442955 RNF2P1-001 processed_pseudogene Homo_sapiens 0 1107
ENST00000453650 RNF2-003 protein_coding Homo_sapiens 0 1003
ENST00000498201 RNF2-004 retained_intron Homo_sapiens 0 481

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