C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: attractin like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000077282 Atrnl1-201 ENSMUSG00000054843 10090 + 19:57611034-58133338 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000077282
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000077282 11.323±4.24 7.016±0.47 4.321±0.50 8.247±1.03 7.876±1.72 23.109±1.16 3.598±0.37 9.105±0.80 2.651±1.35 14.489±0.66 1.416±0.16 12.882±3.01 4.113±1.89 1.463±0.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002OD CIL_0002OD_0002 CGP 19:57452906-58133338
CIL_0006S7 CIL_0006S7_0002 CGP 19:57611034-58455909

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0005886 IEA plasma membrane
GO:0007186 IPI G-protein coupled receptor signaling pathway
GO:0007275 IEA multicellular organismal development
GO:0016021 IEA integral component of membrane
GO:0030246 IEA carbohydrate binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355044 ATRNL1-001 protein_coding Homo_sapiens 0 5206
ENST00000424738 ATRNL1-004 processed_transcript Homo_sapiens 0 483
ENST00000526373 ATRNL1-010 protein_coding Homo_sapiens 0 231
ENST00000526946 ATRNL1-009 protein_coding Homo_sapiens 0 837
ENST00000527407 ATRNL1-005 protein_coding Homo_sapiens 0 1454
ENST00000534530 ATRNL1-011 processed_transcript Homo_sapiens 2e-37 159
ENST00000609571 ATRNL1-002 protein_coding Homo_sapiens 0 1840
ENST00000616894 ATRNL1-003 nonsense_mediated_decay Homo_sapiens 0 889

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